miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24756 3' -56.7 NC_005264.1 + 39005 0.66 0.892194
Target:  5'- aGAGCGAcgacggauggaccAGGGCgUUCGCCAAcgacccagucggacuGGCCGa -3'
miRNA:   3'- -CUCGCU-------------UUCUGgGAGCGGUU---------------CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 158032 0.66 0.892194
Target:  5'- aGAGCGAcgacggauggaccAGGGCgUUCGCCAAcgacccagucggacuGGCCGa -3'
miRNA:   3'- -CUCGCU-------------UUCUGgGAGCGGUU---------------CCGGUc -5'
24756 3' -56.7 NC_005264.1 + 9057 0.66 0.890182
Target:  5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3'
miRNA:   3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5'
24756 3' -56.7 NC_005264.1 + 11942 0.66 0.890182
Target:  5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3'
miRNA:   3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 158998 0.66 0.890182
Target:  5'- cGGCGcAGGACCCaUGCCAGGaG-CAGg -3'
miRNA:   3'- cUCGCuUUCUGGGaGCGGUUC-CgGUC- -5'
24756 3' -56.7 NC_005264.1 + 130968 0.66 0.890182
Target:  5'- gGGGUGAAAGuCCaCUUGCCugacGAGGUCGc -3'
miRNA:   3'- -CUCGCUUUCuGG-GAGCGG----UUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 128084 0.66 0.890182
Target:  5'- uAGCGuuGAGGACCCgacgCGCUGAGGaCgAGc -3'
miRNA:   3'- cUCGC--UUUCUGGGa---GCGGUUCC-GgUC- -5'
24756 3' -56.7 NC_005264.1 + 107791 0.66 0.888148
Target:  5'- uGAGCuccucGAGACCCUCGCUcucuacgcucaugaGGGGCUu- -3'
miRNA:   3'- -CUCGcu---UUCUGGGAGCGG--------------UUCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 71336 0.66 0.883325
Target:  5'- -cGUGAAAGACUCguUCaugaacgagauaGCCgGAGGCCAGg -3'
miRNA:   3'- cuCGCUUUCUGGG--AG------------CGG-UUCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 47312 0.66 0.883325
Target:  5'- cAGCGggGaacuGCCCgCGUCGAGGCguGg -3'
miRNA:   3'- cUCGCuuUc---UGGGaGCGGUUCCGguC- -5'
24756 3' -56.7 NC_005264.1 + 106747 0.66 0.883325
Target:  5'- -uGCGggGGAgccgccuguuuCCCUCGuCCuacGGCUAGa -3'
miRNA:   3'- cuCGCuuUCU-----------GGGAGC-GGuu-CCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 40985 0.66 0.876247
Target:  5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3'
miRNA:   3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 131157 0.66 0.876247
Target:  5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3'
miRNA:   3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 160012 0.66 0.876247
Target:  5'- -cGCGAccGGCCCUCcGCCAacccguuuagguGGGCUc- -3'
miRNA:   3'- cuCGCUuuCUGGGAG-CGGU------------UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 116799 0.66 0.876247
Target:  5'- aGGCGAuuGcGCCCUgGCaucGGCCAGc -3'
miRNA:   3'- cUCGCUuuC-UGGGAgCGguuCCGGUC- -5'
24756 3' -56.7 NC_005264.1 + 12130 0.66 0.876247
Target:  5'- uGGCGGGcaGCCC-CGCCGAGaGCCc- -3'
miRNA:   3'- cUCGCUUucUGGGaGCGGUUC-CGGuc -5'
24756 3' -56.7 NC_005264.1 + 126312 0.66 0.87408
Target:  5'- -cGCGGccGAUggcuccugcgcccgCCUCGUCGAGGCCGc -3'
miRNA:   3'- cuCGCUuuCUG--------------GGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 107149 0.66 0.86895
Target:  5'- cAGUGcccuGAGGgCCUCGCUGAGGUCGu -3'
miRNA:   3'- cUCGCu---UUCUgGGAGCGGUUCCGGUc -5'
24756 3' -56.7 NC_005264.1 + 98151 0.66 0.86895
Target:  5'- cGGGCGAGcacGGCCUgccCGCCGgcAGGCCc- -3'
miRNA:   3'- -CUCGCUUu--CUGGGa--GCGGU--UCCGGuc -5'
24756 3' -56.7 NC_005264.1 + 157320 0.66 0.867465
Target:  5'- cGGCGAcguucguuacGCCUUCGCgGAGGCCGa -3'
miRNA:   3'- cUCGCUuuc-------UGGGAGCGgUUCCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.