miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24806 5' -51.7 NC_005284.1 + 41386 0.66 0.911746
Target:  5'- cCGCGGucACGAUGUUUCGCGaguGGCUa- -3'
miRNA:   3'- -GUGCU--UGCUGCAGAGCGCgc-UUGAac -5'
24806 5' -51.7 NC_005284.1 + 38834 0.66 0.911746
Target:  5'- gGCGAACGugaggccgGCGUCgCGCGCcGACg-- -3'
miRNA:   3'- gUGCUUGC--------UGCAGaGCGCGcUUGaac -5'
24806 5' -51.7 NC_005284.1 + 19796 0.66 0.911094
Target:  5'- gACGGcagcGCGGCGgcagaucUCUCGCGCGGGg--- -3'
miRNA:   3'- gUGCU----UGCUGC-------AGAGCGCGCUUgaac -5'
24806 5' -51.7 NC_005284.1 + 48336 0.66 0.911094
Target:  5'- gGCGG-CGGCGagaugauUCUCGCGCuGGcACUUGc -3'
miRNA:   3'- gUGCUuGCUGC-------AGAGCGCG-CU-UGAAC- -5'
24806 5' -51.7 NC_005284.1 + 6583 0.66 0.9051
Target:  5'- aCACGuacGCGugGcCgcuGCGCGAGCUg- -3'
miRNA:   3'- -GUGCu--UGCugCaGag-CGCGCUUGAac -5'
24806 5' -51.7 NC_005284.1 + 23493 0.66 0.9051
Target:  5'- -uCGAucCGGCGUggCGCGCGGACcUGu -3'
miRNA:   3'- guGCUu-GCUGCAgaGCGCGCUUGaAC- -5'
24806 5' -51.7 NC_005284.1 + 10638 0.66 0.898174
Target:  5'- gACGAGCGGCGgcgaagcgCUgCGCGagGAACUg- -3'
miRNA:   3'- gUGCUUGCUGCa-------GA-GCGCg-CUUGAac -5'
24806 5' -51.7 NC_005284.1 + 23024 0.66 0.890973
Target:  5'- gACGGAUGACGacaagCUCuGCGCaGAGCg-- -3'
miRNA:   3'- gUGCUUGCUGCa----GAG-CGCG-CUUGaac -5'
24806 5' -51.7 NC_005284.1 + 8871 0.66 0.890973
Target:  5'- gCGCaGAACGACGUgcugcgcaUCGCGCGcGACa-- -3'
miRNA:   3'- -GUG-CUUGCUGCAg-------AGCGCGC-UUGaac -5'
24806 5' -51.7 NC_005284.1 + 43112 0.66 0.890973
Target:  5'- uUACGAGCGAC--CUUGCGCGGuGCg-- -3'
miRNA:   3'- -GUGCUUGCUGcaGAGCGCGCU-UGaac -5'
24806 5' -51.7 NC_005284.1 + 50440 0.66 0.890973
Target:  5'- aGCGAGCGcCuUCUCGCcgGCGGAUUUc -3'
miRNA:   3'- gUGCUUGCuGcAGAGCG--CGCUUGAAc -5'
24806 5' -51.7 NC_005284.1 + 7014 0.66 0.890973
Target:  5'- cCGCGAGCGcCGcCUCGaucugcuuaCGCGGACg-- -3'
miRNA:   3'- -GUGCUUGCuGCaGAGC---------GCGCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 43948 0.66 0.8835
Target:  5'- gCGCG-GCGACGagagCUUGCGgGAGCa-- -3'
miRNA:   3'- -GUGCuUGCUGCa---GAGCGCgCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 44994 0.66 0.8835
Target:  5'- uGCcGGCGACGUUggcgCGCGCcguugcgacguGAGCUUGc -3'
miRNA:   3'- gUGcUUGCUGCAGa---GCGCG-----------CUUGAAC- -5'
24806 5' -51.7 NC_005284.1 + 42430 0.66 0.8835
Target:  5'- aACGAgcccacccGCGGCGaaUCGCGCGAAg--- -3'
miRNA:   3'- gUGCU--------UGCUGCagAGCGCGCUUgaac -5'
24806 5' -51.7 NC_005284.1 + 41007 0.67 0.875763
Target:  5'- gCugGAACGGCGaUCgUCGCGgaGGACg-- -3'
miRNA:   3'- -GugCUUGCUGC-AG-AGCGCg-CUUGaac -5'
24806 5' -51.7 NC_005284.1 + 8282 0.67 0.867765
Target:  5'- uGCGAGCaGAUGUCgucCGC-CGAGCUg- -3'
miRNA:   3'- gUGCUUG-CUGCAGa--GCGcGCUUGAac -5'
24806 5' -51.7 NC_005284.1 + 21514 0.67 0.867765
Target:  5'- gGCGGcCGGCG-CUUGCGuCGAGCa-- -3'
miRNA:   3'- gUGCUuGCUGCaGAGCGC-GCUUGaac -5'
24806 5' -51.7 NC_005284.1 + 27672 0.67 0.867765
Target:  5'- aUACGGGcCGGCGUggCGCGCGggUc-- -3'
miRNA:   3'- -GUGCUU-GCUGCAgaGCGCGCuuGaac -5'
24806 5' -51.7 NC_005284.1 + 17675 0.67 0.859516
Target:  5'- gACG-ACGACGggaUCGCGCGAuaugGCg-- -3'
miRNA:   3'- gUGCuUGCUGCag-AGCGCGCU----UGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.