miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24807 5' -55 NC_005284.1 + 16204 0.65 0.754805
Target:  5'- cCGCGuGCGcucgGCCGAacgGCCGucuCGCUCGg -3'
miRNA:   3'- -GUGCuUGUa---CGGCUa--CGGUu--GCGGGC- -5'
24807 5' -55 NC_005284.1 + 8591 0.65 0.754805
Target:  5'- aUACGAccgccGCAUGCgCGGUcucucGUCGACGgCCGg -3'
miRNA:   3'- -GUGCU-----UGUACG-GCUA-----CGGUUGCgGGC- -5'
24807 5' -55 NC_005284.1 + 47793 0.65 0.754805
Target:  5'- gGCGAGCGccaUGUCGAgcgcGCCAuguACGCgCGu -3'
miRNA:   3'- gUGCUUGU---ACGGCUa---CGGU---UGCGgGC- -5'
24807 5' -55 NC_005284.1 + 26330 0.65 0.754805
Target:  5'- gCAUGGACAUucuucagcgcgGCaCGGUcaacGCCGGCGCgCCGg -3'
miRNA:   3'- -GUGCUUGUA-----------CG-GCUA----CGGUUGCG-GGC- -5'
24807 5' -55 NC_005284.1 + 33457 0.66 0.744411
Target:  5'- gCGCGAcACGcGCCcc-GCCAGuCGCCCGc -3'
miRNA:   3'- -GUGCU-UGUaCGGcuaCGGUU-GCGGGC- -5'
24807 5' -55 NC_005284.1 + 53772 0.66 0.733903
Target:  5'- aUACGGuu-UGCUGAUGCCGGCuGCUgCGg -3'
miRNA:   3'- -GUGCUuguACGGCUACGGUUG-CGG-GC- -5'
24807 5' -55 NC_005284.1 + 18757 0.66 0.733903
Target:  5'- gACGAGCAUaCCaAUcGCCAGuacCGCCCGu -3'
miRNA:   3'- gUGCUUGUAcGGcUA-CGGUU---GCGGGC- -5'
24807 5' -55 NC_005284.1 + 21563 0.66 0.723293
Target:  5'- gACGAGCAgGCCGc-GCgGGCGUUCGa -3'
miRNA:   3'- gUGCUUGUaCGGCuaCGgUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 50395 0.66 0.723293
Target:  5'- gACGAAaccguuGUGCCG-UGCCAcucgaaccaaucGCGCCaCGg -3'
miRNA:   3'- gUGCUUg-----UACGGCuACGGU------------UGCGG-GC- -5'
24807 5' -55 NC_005284.1 + 36049 0.66 0.712592
Target:  5'- cCGCGAGCcccUGauaCGAcGUCGACGCCUGc -3'
miRNA:   3'- -GUGCUUGu--ACg--GCUaCGGUUGCGGGC- -5'
24807 5' -55 NC_005284.1 + 38104 0.66 0.712592
Target:  5'- aGCG-GCAcGCCGAcGCCGgccucACGCUCGa -3'
miRNA:   3'- gUGCuUGUaCGGCUaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8311 0.66 0.712592
Target:  5'- gCACGAGCA-GCUaacGCCAGCGUCgGa -3'
miRNA:   3'- -GUGCUUGUaCGGcuaCGGUUGCGGgC- -5'
24807 5' -55 NC_005284.1 + 9663 0.66 0.712592
Target:  5'- uCGCGGGCAUGCgagCGAUGCgCGAaaGCCUu -3'
miRNA:   3'- -GUGCUUGUACG---GCUACG-GUUg-CGGGc -5'
24807 5' -55 NC_005284.1 + 21190 0.66 0.712592
Target:  5'- -uCGAGCAcGCgGA-GCCGguccugacgugcACGCCCGg -3'
miRNA:   3'- guGCUUGUaCGgCUaCGGU------------UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 8423 0.66 0.712592
Target:  5'- -uCGGACAugaUGCCGAgaugGuCCGGCgaGCCCGc -3'
miRNA:   3'- guGCUUGU---ACGGCUa---C-GGUUG--CGGGC- -5'
24807 5' -55 NC_005284.1 + 33019 0.66 0.701811
Target:  5'- aGCGAcgcGCA-GCCGcucaGUGCCAGCggcaagagcaGCCCGc -3'
miRNA:   3'- gUGCU---UGUaCGGC----UACGGUUG----------CGGGC- -5'
24807 5' -55 NC_005284.1 + 9078 0.66 0.701811
Target:  5'- cCGCGAAgAUguacaGCCG-UGUCGACGCgCGg -3'
miRNA:   3'- -GUGCUUgUA-----CGGCuACGGUUGCGgGC- -5'
24807 5' -55 NC_005284.1 + 23071 0.66 0.701811
Target:  5'- aGCGAGCAugguaUGUCGAUGCgGcuacguacGCGCuuGa -3'
miRNA:   3'- gUGCUUGU-----ACGGCUACGgU--------UGCGggC- -5'
24807 5' -55 NC_005284.1 + 48872 0.66 0.701811
Target:  5'- gGCGGAgAaGUCGgcGCCGuggacACGCCCGc -3'
miRNA:   3'- gUGCUUgUaCGGCuaCGGU-----UGCGGGC- -5'
24807 5' -55 NC_005284.1 + 28275 0.67 0.684425
Target:  5'- gGCGAAC-UGCCGAUGCaucagacuggauCGCCa- -3'
miRNA:   3'- gUGCUUGuACGGCUACGguu---------GCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.