miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 5' -52.9 NC_005284.1 + 38311 0.66 0.848943
Target:  5'- --aACUGCGuUCGucccucauggguacuGUUCGCGCcAUUCGUa -3'
miRNA:   3'- aagUGGCGC-AGC---------------UAAGCGCG-UAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 37198 0.66 0.845446
Target:  5'- --gACCGUGUaaCGcgUCuuGCGUUCGCu -3'
miRNA:   3'- aagUGGCGCA--GCuaAGcgCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 44485 0.66 0.845446
Target:  5'- -gCGCCuGCauGUCGAUcagacucgacgUCGCGCugcUCGCg -3'
miRNA:   3'- aaGUGG-CG--CAGCUA-----------AGCGCGua-AGCG- -5'
24810 5' -52.9 NC_005284.1 + 43530 0.66 0.845446
Target:  5'- cUUCGCCGCG-CGAgcCGCugccGCGUUgGUc -3'
miRNA:   3'- -AAGUGGCGCaGCUaaGCG----CGUAAgCG- -5'
24810 5' -52.9 NC_005284.1 + 1164 0.66 0.845446
Target:  5'- gUCGCuCGUcucGUCGAUcUGCGUAUugcagUCGCa -3'
miRNA:   3'- aAGUG-GCG---CAGCUAaGCGCGUA-----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 6874 0.66 0.845446
Target:  5'- aUCACCuuggcCGUCGGcgggaacugcUCGCGCAUagCGCg -3'
miRNA:   3'- aAGUGGc----GCAGCUa---------AGCGCGUAa-GCG- -5'
24810 5' -52.9 NC_005284.1 + 39526 0.66 0.836542
Target:  5'- cUCGCCGCGgcCGA--UGUGCuucaUCGCa -3'
miRNA:   3'- aAGUGGCGCa-GCUaaGCGCGua--AGCG- -5'
24810 5' -52.9 NC_005284.1 + 102 0.66 0.836542
Target:  5'- gUCACCGCaacCGc-UCGCGCGccgucUUCGCc -3'
miRNA:   3'- aAGUGGCGca-GCuaAGCGCGU-----AAGCG- -5'
24810 5' -52.9 NC_005284.1 + 23506 0.66 0.818077
Target:  5'- cUCGCCGUGUaCGGUgCGCGagaAUacaugaaaggUCGCg -3'
miRNA:   3'- aAGUGGCGCA-GCUAaGCGCg--UA----------AGCG- -5'
24810 5' -52.9 NC_005284.1 + 30251 0.66 0.818077
Target:  5'- gUCGgC-CGUCGAgcggGCGCGUUCGUu -3'
miRNA:   3'- aAGUgGcGCAGCUaag-CGCGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 45880 0.66 0.814284
Target:  5'- cUCGgcugUCGCGUCGAgcgguugccguggUCGCGCGcgaugCGCa -3'
miRNA:   3'- aAGU----GGCGCAGCUa------------AGCGCGUaa---GCG- -5'
24810 5' -52.9 NC_005284.1 + 35645 0.66 0.808535
Target:  5'- -gUACUGCGUCaGGUUCacgauGC-CGUUCGCg -3'
miRNA:   3'- aaGUGGCGCAG-CUAAG-----CGcGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 21343 0.67 0.798801
Target:  5'- -gCACUGCGgaUCGAcuacCGCGCAggCGUg -3'
miRNA:   3'- aaGUGGCGC--AGCUaa--GCGCGUaaGCG- -5'
24810 5' -52.9 NC_005284.1 + 8356 0.67 0.798801
Target:  5'- --gACgGCGaUCGGUUCGUucgcuccaucGCAUUUGCa -3'
miRNA:   3'- aagUGgCGC-AGCUAAGCG----------CGUAAGCG- -5'
24810 5' -52.9 NC_005284.1 + 37802 0.67 0.798801
Target:  5'- gUCGCCGUGUgCGcGUUCG-GCGUgaugcggCGCa -3'
miRNA:   3'- aAGUGGCGCA-GC-UAAGCgCGUAa------GCG- -5'
24810 5' -52.9 NC_005284.1 + 36588 0.67 0.788888
Target:  5'- -gCGCCGuCGUCGA-UCGcCGCGUacuuccccggcUCGUa -3'
miRNA:   3'- aaGUGGC-GCAGCUaAGC-GCGUA-----------AGCG- -5'
24810 5' -52.9 NC_005284.1 + 4674 0.67 0.788888
Target:  5'- -aCGCCGCGUgcgCGA-UCGCcGCGUUaCGUu -3'
miRNA:   3'- aaGUGGCGCA---GCUaAGCG-CGUAA-GCG- -5'
24810 5' -52.9 NC_005284.1 + 32855 0.67 0.788888
Target:  5'- --gGCCGUcaguuuGUCGAUcUCGCGCugaucgUCGCc -3'
miRNA:   3'- aagUGGCG------CAGCUA-AGCGCGua----AGCG- -5'
24810 5' -52.9 NC_005284.1 + 15179 0.67 0.778804
Target:  5'- --gGCCGUGcCGAccgaccagUUCGCGC--UCGCg -3'
miRNA:   3'- aagUGGCGCaGCU--------AAGCGCGuaAGCG- -5'
24810 5' -52.9 NC_005284.1 + 31626 0.67 0.778804
Target:  5'- --gGCgGCGUCGAgg-GCGCAUUC-Ca -3'
miRNA:   3'- aagUGgCGCAGCUaagCGCGUAAGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.