Results 1 - 20 of 122 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 49133 | 0.69 | 0.341964 |
Target: 5'- aUGCGUuuuaaGGCgcgCGUCGUCAAggcggacggGCCCGGCg -3' miRNA: 3'- cAUGCGg----CCG---GCAGCGGUU---------UGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 18801 | 0.7 | 0.2896 |
Target: 5'- -cACGuCCGGCaaCGUCggGCCGugguuCCCGGCg -3' miRNA: 3'- caUGC-GGCCG--GCAG--CGGUuu---GGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 46033 | 0.7 | 0.2896 |
Target: 5'- uGU-CGCCGGgCGUCGagCAGGCCucgaCGGCa -3' miRNA: 3'- -CAuGCGGCCgGCAGCg-GUUUGG----GCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 50824 | 0.7 | 0.2896 |
Target: 5'- aGUGCGauGGCCGUUggGUgGGGCCgGGCg -3' miRNA: 3'- -CAUGCggCCGGCAG--CGgUUUGGgCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 10947 | 0.69 | 0.311237 |
Target: 5'- ---gGCCGGCCucGUCGCCGGACgagCGGa -3' miRNA: 3'- caugCGGCCGG--CAGCGGUUUGg--GCCg -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 54722 | 0.69 | 0.318718 |
Target: 5'- --cCGUCcGUCGUUGCCc-GCCCGGCg -3' miRNA: 3'- cauGCGGcCGGCAGCGGuuUGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 38577 | 0.69 | 0.334082 |
Target: 5'- -aGCGagaCGGCCGUUcgGCCGAgcgcACgCGGCg -3' miRNA: 3'- caUGCg--GCCGGCAG--CGGUU----UGgGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 45552 | 0.69 | 0.34117 |
Target: 5'- cUAUGCCgccgcguGGCgCGUCGCCcgcgcACUCGGCu -3' miRNA: 3'- cAUGCGG-------CCG-GCAGCGGuu---UGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 48066 | 0.69 | 0.341964 |
Target: 5'- gGUGCGCUGcGCauuacgCGCCG-GCCCGGUc -3' miRNA: 3'- -CAUGCGGC-CGgca---GCGGUuUGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 13314 | 0.7 | 0.282654 |
Target: 5'- ----aCUGGCaCGUCGCCGAGCgCGGUc -3' miRNA: 3'- caugcGGCCG-GCAGCGGUUUGgGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 4920 | 0.7 | 0.275841 |
Target: 5'- aUGCGCCGGCacugcaauCGUauaucgacgGCCGuGCCCGGUa -3' miRNA: 3'- cAUGCGGCCG--------GCAg--------CGGUuUGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 14201 | 0.71 | 0.2499 |
Target: 5'- -aGgGgCGGCCGUCGCUGAccuUCCGGUa -3' miRNA: 3'- caUgCgGCCGGCAGCGGUUu--GGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 47163 | 0.74 | 0.145153 |
Target: 5'- uGUACGaCCGGCgCGUacaucaggCGCCGAACCCGa- -3' miRNA: 3'- -CAUGC-GGCCG-GCA--------GCGGUUUGGGCcg -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 30658 | 0.73 | 0.165719 |
Target: 5'- uGUGCGUgCGGCCGUCGagCAGccGgCCGGCg -3' miRNA: 3'- -CAUGCG-GCCGGCAGCg-GUU--UgGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 15959 | 0.73 | 0.170134 |
Target: 5'- -gACGCCGGCCcacguUCGCCGuguucAACggCCGGCg -3' miRNA: 3'- caUGCGGCCGGc----AGCGGU-----UUG--GGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 51588 | 0.73 | 0.179281 |
Target: 5'- cGUugGCUGgaGCCGUCGUUc--CCCGGCa -3' miRNA: 3'- -CAugCGGC--CGGCAGCGGuuuGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 17506 | 0.73 | 0.188862 |
Target: 5'- -cGCGUCGGCCGauaUGCCGuccGAUCCGGUc -3' miRNA: 3'- caUGCGGCCGGCa--GCGGU---UUGGGCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 32516 | 0.73 | 0.188862 |
Target: 5'- -cGCGCUGGCUGuUCGUCAGGCUcgccacccucgCGGCg -3' miRNA: 3'- caUGCGGCCGGC-AGCGGUUUGG-----------GCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 10547 | 0.72 | 0.20938 |
Target: 5'- --uCGCCGGCCuggaUCGCCucaagacgucGAACCuCGGCg -3' miRNA: 3'- cauGCGGCCGGc---AGCGG----------UUUGG-GCCG- -5' |
|||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 15473 | 0.71 | 0.237702 |
Target: 5'- cGUGCGCgacUGGUaucUCGCCGAGCgCGGCg -3' miRNA: 3'- -CAUGCG---GCCGgc-AGCGGUUUGgGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home