miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 3' -57.6 NC_005284.1 + 14616 0.66 0.57684
Target:  5'- cGGCGC-CGAaCGcUCGCGCGCuaccucgacGCCGu -3'
miRNA:   3'- -UCGUGuGCUaGCuAGCGCGCG---------CGGUu -5'
24816 3' -57.6 NC_005284.1 + 18914 0.66 0.566024
Target:  5'- cGGCGCuuGGcaCGGagcUGCGCGCGCCGAu -3'
miRNA:   3'- -UCGUGugCUa-GCUa--GCGCGCGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 13187 0.66 0.566024
Target:  5'- cGCACuCGGcgCGGccUCGCGCGCGUa-- -3'
miRNA:   3'- uCGUGuGCUa-GCU--AGCGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 49344 0.66 0.566024
Target:  5'- cGUGCGCGAcgaccgaacuaUCGGUCGCaGCuuCGCCGAg -3'
miRNA:   3'- uCGUGUGCU-----------AGCUAGCG-CGc-GCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 22920 0.66 0.559559
Target:  5'- cGGCGCAgccagucgggcuguuCuGAUCGAUUgGCGCGCGCg-- -3'
miRNA:   3'- -UCGUGU---------------G-CUAGCUAG-CGCGCGCGguu -5'
24816 3' -57.6 NC_005284.1 + 39691 0.66 0.55526
Target:  5'- cAGCACucgcGCGGauacucugCGAgCGCGUGCGCCu- -3'
miRNA:   3'- -UCGUG----UGCUa-------GCUaGCGCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 5997 0.66 0.55526
Target:  5'- gGGCAgCuCGAUUGAUCGCaGUuCGCCAu -3'
miRNA:   3'- -UCGU-GuGCUAGCUAGCG-CGcGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 35461 0.66 0.55526
Target:  5'- cGCGCugGAUC--UCGCGCgGUGCgAGc -3'
miRNA:   3'- uCGUGugCUAGcuAGCGCG-CGCGgUU- -5'
24816 3' -57.6 NC_005284.1 + 18199 0.66 0.55526
Target:  5'- aAGUACGCGG-CGAUCGaCGacgGCGCaCAGa -3'
miRNA:   3'- -UCGUGUGCUaGCUAGC-GCg--CGCG-GUU- -5'
24816 3' -57.6 NC_005284.1 + 42367 0.66 0.55526
Target:  5'- uGGCGCGCuGAcCGAgauccCGCcguuGCGCGCCGg -3'
miRNA:   3'- -UCGUGUG-CUaGCUa----GCG----CGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 18754 0.66 0.552043
Target:  5'- gGGCuCGCGGUCGGgcagguguuuuauuUCuGgGCGCGCCu- -3'
miRNA:   3'- -UCGuGUGCUAGCU--------------AG-CgCGCGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 42150 0.66 0.544558
Target:  5'- cGCACACGcagcGUCGuAUCGCcGCcGUGCCc- -3'
miRNA:   3'- uCGUGUGC----UAGC-UAGCG-CG-CGCGGuu -5'
24816 3' -57.6 NC_005284.1 + 44975 0.66 0.54136
Target:  5'- cGCGCGcCGAUuuccugacugccggCGAcguUgGCGCGCGCCGu -3'
miRNA:   3'- uCGUGU-GCUA--------------GCU---AgCGCGCGCGGUu -5'
24816 3' -57.6 NC_005284.1 + 31154 0.66 0.533923
Target:  5'- uGGUugACGAUCG-UCGCGC-CGauCCAGa -3'
miRNA:   3'- -UCGugUGCUAGCuAGCGCGcGC--GGUU- -5'
24816 3' -57.6 NC_005284.1 + 22751 0.66 0.533923
Target:  5'- gAGCGgcUGCGGUCGAUCaagggGCGCGCGaUCGu -3'
miRNA:   3'- -UCGU--GUGCUAGCUAG-----CGCGCGC-GGUu -5'
24816 3' -57.6 NC_005284.1 + 32875 0.67 0.523363
Target:  5'- cGCGC-UGAUCG-UCGCcgGCGaCGCCGAa -3'
miRNA:   3'- uCGUGuGCUAGCuAGCG--CGC-GCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 11405 0.67 0.523363
Target:  5'- cAGCGCGgGAcUUGA-CGCGCuGCGUCGAu -3'
miRNA:   3'- -UCGUGUgCU-AGCUaGCGCG-CGCGGUU- -5'
24816 3' -57.6 NC_005284.1 + 16998 0.67 0.523363
Target:  5'- cGCACACGGcgaCGAUCGCcGaCGCGaUCAAc -3'
miRNA:   3'- uCGUGUGCUa--GCUAGCG-C-GCGC-GGUU- -5'
24816 3' -57.6 NC_005284.1 + 10391 0.67 0.523363
Target:  5'- uGCGCACGAagcaagaggCG-UCGCGgGCgGCCGAu -3'
miRNA:   3'- uCGUGUGCUa--------GCuAGCGCgCG-CGGUU- -5'
24816 3' -57.6 NC_005284.1 + 35850 0.67 0.523363
Target:  5'- cGGCGgGgugauuaGGUCGAUCgGCGCGCGCa-- -3'
miRNA:   3'- -UCGUgUg------CUAGCUAG-CGCGCGCGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.