miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 24920 0.66 0.444807
Target:  5'- cGCCGGcGCCGaccauCGCGAGauGCGUCg -3'
miRNA:   3'- aCGGCU-CGGCguc--GCGCUCgcUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 956 0.66 0.444807
Target:  5'- gUGCCGAGguguaCGcCGGCGCGA-CGACu-- -3'
miRNA:   3'- -ACGGCUCg----GC-GUCGCGCUcGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 12040 0.66 0.435322
Target:  5'- cGCCGAccucgcGCgGUuuucGGCGCGugcGGCGAUGUCu -3'
miRNA:   3'- aCGGCU------CGgCG----UCGCGC---UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7891 0.66 0.435322
Target:  5'- gUGCgCGAGCCGaCGGU-CG-GCGACcgCa -3'
miRNA:   3'- -ACG-GCUCGGC-GUCGcGCuCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 16881 0.66 0.435322
Target:  5'- gUGCUG-GCCGguGCGUucgacggcaaGA-CGACGUCg -3'
miRNA:   3'- -ACGGCuCGGCguCGCG----------CUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 22930 0.66 0.435322
Target:  5'- aGUCGGGCUGUucugaucgauuGGCGCGcGCGuugcuCGUCu -3'
miRNA:   3'- aCGGCUCGGCG-----------UCGCGCuCGCu----GUAG- -5'
24820 5' -60.4 NC_005284.1 + 38534 0.66 0.43438
Target:  5'- aGCCGAuagugauGCCGUAG-GCGAG-GAuCAUCc -3'
miRNA:   3'- aCGGCU-------CGGCGUCgCGCUCgCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 32789 0.66 0.425026
Target:  5'- cUGCCGgugcgucGGCCugcGCGGguUGCgGGGCGGCGUCg -3'
miRNA:   3'- -ACGGC-------UCGG---CGUC--GCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9459 0.66 0.425026
Target:  5'- uUGCCGuGuacuuugggcaauCCGCAGuCGCG-GCGACGc- -3'
miRNA:   3'- -ACGGCuC-------------GGCGUC-GCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 39817 0.66 0.420394
Target:  5'- -aCCGGGCCGCgugccgcauugcaugGGCGCGGcCGAUGUUc -3'
miRNA:   3'- acGGCUCGGCG---------------UCGCGCUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 49719 0.66 0.41671
Target:  5'- uUGUCGAucggcGUCGCAuuCGCGAGCGugAUg -3'
miRNA:   3'- -ACGGCU-----CGGCGUc-GCGCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 21827 0.66 0.41671
Target:  5'- gUGcCCGGcgcuuccagcGCCGcCGGCGUGGGCGAUg-- -3'
miRNA:   3'- -AC-GGCU----------CGGC-GUCGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 455 0.66 0.407589
Target:  5'- cGgCGAGCCgGCAGCGCcuGGuCGGCGc- -3'
miRNA:   3'- aCgGCUCGG-CGUCGCGc-UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 46682 0.66 0.407589
Target:  5'- gGCCGAacGCCGC--CGCGAccGCGguuGCAUCg -3'
miRNA:   3'- aCGGCU--CGGCGucGCGCU--CGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 36892 0.66 0.407589
Target:  5'- cGCC-AGCCGCuGCGCGGauGCGcCcgCc -3'
miRNA:   3'- aCGGcUCGGCGuCGCGCU--CGCuGuaG- -5'
24820 5' -60.4 NC_005284.1 + 7171 0.66 0.407589
Target:  5'- cGCa-AGCUuCAGCGCGuGCGACAc- -3'
miRNA:   3'- aCGgcUCGGcGUCGCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 1230 0.66 0.404877
Target:  5'- cGCCGgcAGCCGCucauGUucaucaucacgacuGCGGGCGcgaACAUCg -3'
miRNA:   3'- aCGGC--UCGGCGu---CG--------------CGCUCGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21733 0.66 0.398593
Target:  5'- aGCagaGAGUCGCAGCcuGCGGGCuGC-UCu -3'
miRNA:   3'- aCGg--CUCGGCGUCG--CGCUCGcUGuAG- -5'
24820 5' -60.4 NC_005284.1 + 10005 0.67 0.389725
Target:  5'- gGCCGAGacggaCCGCGGCcuugcgcaaGcCGAGCGugAUg -3'
miRNA:   3'- aCGGCUC-----GGCGUCG---------C-GCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 49372 0.67 0.389725
Target:  5'- aGCUucGCCG-AGCGCGAGCuGGCGc- -3'
miRNA:   3'- aCGGcuCGGCgUCGCGCUCG-CUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.