miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 5' -57.5 NC_005284.1 + 16065 0.66 0.58964
Target:  5'- cGGCAguaAGCGCGGggggcucuuCAaCACGauuCUCGGCg -3'
miRNA:   3'- aCCGU---UCGCGCU---------GUaGUGC---GAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 21570 0.66 0.58964
Target:  5'- aGGCc-GCGCgGGCGUUcgACGCgcagCGGCa -3'
miRNA:   3'- aCCGuuCGCG-CUGUAG--UGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 24080 0.66 0.578778
Target:  5'- aUGGCGAaCGCGucCAUUAUGCagagcgcgUCGGCa -3'
miRNA:   3'- -ACCGUUcGCGCu-GUAGUGCG--------AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 38106 0.66 0.578778
Target:  5'- cGGCAcGC-CGACGccggccUCACGCUCgacGGCc -3'
miRNA:   3'- aCCGUuCGcGCUGU------AGUGCGAG---CCGa -5'
24823 5' -57.5 NC_005284.1 + 4667 0.66 0.578778
Target:  5'- aUGGCGAacgccgcguGCGCGaucgccGCGUUACGUucucgaugcuguUCGGCUg -3'
miRNA:   3'- -ACCGUU---------CGCGC------UGUAGUGCG------------AGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 9814 0.66 0.572282
Target:  5'- cGGCAgucaggaaaucGGCGCGcGCAUCACGggcacgcccuacgCGGCg -3'
miRNA:   3'- aCCGU-----------UCGCGC-UGUAGUGCga-----------GCCGa -5'
24823 5' -57.5 NC_005284.1 + 1671 0.66 0.567961
Target:  5'- cGGCuuuucuGGCaCGACAUCgACGggCGGCg -3'
miRNA:   3'- aCCGu-----UCGcGCUGUAG-UGCgaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 19798 0.66 0.567961
Target:  5'- cGGC-AGCGCGGCGgcagaucucUCGCGCggGGa- -3'
miRNA:   3'- aCCGuUCGCGCUGU---------AGUGCGagCCga -5'
24823 5' -57.5 NC_005284.1 + 31793 0.66 0.567961
Target:  5'- cGG--AGCGCGGCuccggCugGCUCGGa- -3'
miRNA:   3'- aCCguUCGCGCUGua---GugCGAGCCga -5'
24823 5' -57.5 NC_005284.1 + 10387 0.66 0.567961
Target:  5'- cGGCu-GCGCacgaagcaagaGGCGUCGCGggCGGCc -3'
miRNA:   3'- aCCGuuCGCG-----------CUGUAGUGCgaGCCGa -5'
24823 5' -57.5 NC_005284.1 + 53699 0.66 0.566882
Target:  5'- cGGCAAGUGCgcuggcgaucuuaGACAgCACG-UCGGUa -3'
miRNA:   3'- aCCGUUCGCG-------------CUGUaGUGCgAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 14056 0.66 0.557195
Target:  5'- cGGCAGGCugGCGuCAUCGCGaacgagUGGUg -3'
miRNA:   3'- aCCGUUCG--CGCuGUAGUGCga----GCCGa -5'
24823 5' -57.5 NC_005284.1 + 7464 0.66 0.557195
Target:  5'- -cGCGAGCGaCGAaaaggaAUCcgaGCUCGGCUu -3'
miRNA:   3'- acCGUUCGC-GCUg-----UAGug-CGAGCCGA- -5'
24823 5' -57.5 NC_005284.1 + 15806 0.66 0.550764
Target:  5'- gUGaGCGAGaCGCuucGCAUgauaaggcuguacggCACGCUCGGCg -3'
miRNA:   3'- -AC-CGUUC-GCGc--UGUA---------------GUGCGAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 45644 0.66 0.546489
Target:  5'- gGGCAGGCugGCGGCucGUCgguGCGCgaggCGGUg -3'
miRNA:   3'- aCCGUUCG--CGCUG--UAG---UGCGa---GCCGa -5'
24823 5' -57.5 NC_005284.1 + 9894 0.66 0.546489
Target:  5'- aGGagcuCGAGCGCGcCGaagcgucgcUCGCGCUCGcGCa -3'
miRNA:   3'- aCC----GUUCGCGCuGU---------AGUGCGAGC-CGa -5'
24823 5' -57.5 NC_005284.1 + 14007 0.66 0.535849
Target:  5'- cGGUAAGCGgGGCGUgACGUaUCuGCa -3'
miRNA:   3'- aCCGUUCGCgCUGUAgUGCG-AGcCGa -5'
24823 5' -57.5 NC_005284.1 + 39603 0.66 0.535849
Target:  5'- -cGCGAGCGCGAa--CugGUcggUCGGCa -3'
miRNA:   3'- acCGUUCGCGCUguaGugCG---AGCCGa -5'
24823 5' -57.5 NC_005284.1 + 47714 0.66 0.535849
Target:  5'- cGGCAAGCcgauCGGCGUCggugaACG-UCGGCg -3'
miRNA:   3'- aCCGUUCGc---GCUGUAG-----UGCgAGCCGa -5'
24823 5' -57.5 NC_005284.1 + 9495 0.67 0.525282
Target:  5'- -cGCAGGCgGCGACA--GCGUgggUCGGCg -3'
miRNA:   3'- acCGUUCG-CGCUGUagUGCG---AGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.