Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24828 | 3' | -57.8 | NC_005284.1 | + | 10383 | 0.66 | 0.593031 |
Target: 5'- uGAGCggcUGCgCacgaagcaagaGGCGUCGCGGGCGGCc -3' miRNA: 3'- -CUCGa--ACGgG-----------CUGCGGCGCUUGCUGu -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 21643 | 0.66 | 0.582256 |
Target: 5'- cGAGCagcGUgCGAuCGCCGCGcACGAUg -3' miRNA: 3'- -CUCGaa-CGgGCU-GCGGCGCuUGCUGu -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 54459 | 0.66 | 0.582256 |
Target: 5'- -----aGUCCGACGCgGUGcGCGGCAa -3' miRNA: 3'- cucgaaCGGGCUGCGgCGCuUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 8205 | 0.66 | 0.582256 |
Target: 5'- cGGCgUUGCCCacuGCGCCGCcaugcuCGGCAa -3' miRNA: 3'- cUCG-AACGGGc--UGCGGCGcuu---GCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 44776 | 0.66 | 0.581181 |
Target: 5'- cGGCUUGCgCaAgGCCGCGGuccgucucggccaGCGACGc -3' miRNA: 3'- cUCGAACGgGcUgCGGCGCU-------------UGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 7710 | 0.66 | 0.571523 |
Target: 5'- --cCUUGCCCGAUGCCcCGua-GACGu -3' miRNA: 3'- cucGAACGGGCUGCGGcGCuugCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 14634 | 0.66 | 0.571523 |
Target: 5'- -cGCUacCUCGACGCCGUGAAuuuuccggcCGGCAa -3' miRNA: 3'- cuCGAacGGGCUGCGGCGCUU---------GCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 7427 | 0.66 | 0.571523 |
Target: 5'- aGGGCggGCagucggaagaaaUCGACGCgacgacguuCGCGAGCGACGa -3' miRNA: 3'- -CUCGaaCG------------GGCUGCG---------GCGCUUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 19173 | 0.66 | 0.571523 |
Target: 5'- cGAGCUUG-UCGGCGCUGU---CGACAg -3' miRNA: 3'- -CUCGAACgGGCUGCGGCGcuuGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 1000 | 0.66 | 0.571523 |
Target: 5'- aGGuCUUucGCCCGGCGCgGCuGAugGugAa -3' miRNA: 3'- cUC-GAA--CGGGCUGCGgCG-CUugCugU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 46543 | 0.66 | 0.560838 |
Target: 5'- -cGuCUUGCCgaGcCGCagCGCGAGCGACAu -3' miRNA: 3'- cuC-GAACGGg-CuGCG--GCGCUUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 9887 | 0.66 | 0.560838 |
Target: 5'- -cGCacccGCCCGGauaGuuGUGAGCGACGg -3' miRNA: 3'- cuCGaa--CGGGCUg--CggCGCUUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 6323 | 0.66 | 0.550208 |
Target: 5'- cGAGUaUGCgcauUCGAuuuCGCCGCGAuguCGACAg -3' miRNA: 3'- -CUCGaACG----GGCU---GCGGCGCUu--GCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 930 | 0.66 | 0.539641 |
Target: 5'- -cGCUgUGCUCGAUGCUgaacugGCGGGCGAUc -3' miRNA: 3'- cuCGA-ACGGGCUGCGG------CGCUUGCUGu -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 12349 | 0.66 | 0.539641 |
Target: 5'- cGGCUUcGCgCGAuuCGCCGCGggUGGg- -3' miRNA: 3'- cUCGAA-CGgGCU--GCGGCGCuuGCUgu -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 33544 | 0.67 | 0.529143 |
Target: 5'- aAGCUca-CCGcCGCCGCGAGCuGAUAu -3' miRNA: 3'- cUCGAacgGGCuGCGGCGCUUG-CUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 8436 | 0.67 | 0.529143 |
Target: 5'- cGAGaugGUCCGGCGagcCCGCG-ACGGCGg -3' miRNA: 3'- -CUCgaaCGGGCUGC---GGCGCuUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 27989 | 0.67 | 0.528098 |
Target: 5'- -cGCUcGCgCGAUGuugcagcucuaucCCGCGGGCGACAu -3' miRNA: 3'- cuCGAaCGgGCUGC-------------GGCGCUUGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 14523 | 0.67 | 0.518722 |
Target: 5'- cAGCcauCgCCGACGCUGCGGguggGCGACAu -3' miRNA: 3'- cUCGaacG-GGCUGCGGCGCU----UGCUGU- -5' |
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24828 | 3' | -57.8 | NC_005284.1 | + | 49158 | 0.67 | 0.518722 |
Target: 5'- aGGCggacggGCCCGGCGagGCGAugGAgGa -3' miRNA: 3'- cUCGaa----CGGGCUGCggCGCUugCUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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