miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 3' -52.3 NC_005284.1 + 12149 0.66 0.851029
Target:  5'- gGUgCGGCAAGCGCGGcUGU-CGGcUCg -3'
miRNA:   3'- -UAgGCCGUUUGCGCUuACGcGCUuAG- -5'
24904 3' -52.3 NC_005284.1 + 18102 0.66 0.851029
Target:  5'- -cUCGGCGAGCGUGAccGUGuCGCc-GUCg -3'
miRNA:   3'- uaGGCCGUUUGCGCU--UAC-GCGcuUAG- -5'
24904 3' -52.3 NC_005284.1 + 4800 0.66 0.851029
Target:  5'- -cCCGGCAugaGCaAAU-CGCGAAUCg -3'
miRNA:   3'- uaGGCCGUuugCGcUUAcGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 9665 0.66 0.851029
Target:  5'- -gCgGGCA--UGCGAgcgAUGCGCGAAa- -3'
miRNA:   3'- uaGgCCGUuuGCGCU---UACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 33544 0.66 0.850151
Target:  5'- -gCCGGCcGACgGCGcGUGUaagcacuGCGGAUCg -3'
miRNA:   3'- uaGGCCGuUUG-CGCuUACG-------CGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 12899 0.66 0.842136
Target:  5'- aGUCC-GCGGGCGCGAA-GCgGCGGcGUCc -3'
miRNA:   3'- -UAGGcCGUUUGCGCUUaCG-CGCU-UAG- -5'
24904 3' -52.3 NC_005284.1 + 49532 0.66 0.842136
Target:  5'- gGUUCGacaGCAAGCGCGAGcgGuCGCGAugguUCg -3'
miRNA:   3'- -UAGGC---CGUUUGCGCUUa-C-GCGCUu---AG- -5'
24904 3' -52.3 NC_005284.1 + 10897 0.66 0.842136
Target:  5'- -gCCGaGUAcgaAGCGCGGAcgaaggGCGCGAAUg -3'
miRNA:   3'- uaGGC-CGU---UUGCGCUUa-----CGCGCUUAg -5'
24904 3' -52.3 NC_005284.1 + 16034 0.66 0.842136
Target:  5'- --aCGGCGAACGUGAGgccggcgucGCGCGccgacGUCa -3'
miRNA:   3'- uagGCCGUUUGCGCUUa--------CGCGCu----UAG- -5'
24904 3' -52.3 NC_005284.1 + 48515 0.66 0.833007
Target:  5'- ---gGGCGGGCGUGGGaauacGCGCGAAUa -3'
miRNA:   3'- uaggCCGUUUGCGCUUa----CGCGCUUAg -5'
24904 3' -52.3 NC_005284.1 + 8366 0.66 0.833007
Target:  5'- cAUgCGGCGAugauCGCGGcgGCgGCGuuUCa -3'
miRNA:   3'- -UAgGCCGUUu---GCGCUuaCG-CGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 16669 0.66 0.833007
Target:  5'- uUCCGGCcgucGAGCGUGAGgccgGCGuCGGcgUg -3'
miRNA:   3'- uAGGCCG----UUUGCGCUUa---CGC-GCUuaG- -5'
24904 3' -52.3 NC_005284.1 + 15933 0.66 0.833007
Target:  5'- uUCCGGCGuuccuGACGUcGGcGCGCGAcgCc -3'
miRNA:   3'- uAGGCCGU-----UUGCGcUUaCGCGCUuaG- -5'
24904 3' -52.3 NC_005284.1 + 47361 0.66 0.822705
Target:  5'- uUCCaGCGAucccgaaGCGCGucAUGCGCGAcagcgacaaGUCg -3'
miRNA:   3'- uAGGcCGUU-------UGCGCu-UACGCGCU---------UAG- -5'
24904 3' -52.3 NC_005284.1 + 49169 0.66 0.821756
Target:  5'- -cCCGGCGAG-GCGAuggaggaaaugcUGCGCGAGg- -3'
miRNA:   3'- uaGGCCGUUUgCGCUu-----------ACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 7671 0.66 0.814083
Target:  5'- -gUCGGCGAACGUGA---CGCGGAa- -3'
miRNA:   3'- uaGGCCGUUUGCGCUuacGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 21700 0.66 0.814083
Target:  5'- -cUCGGCGucgAGCGCGGc-GCGCGAGaUCu -3'
miRNA:   3'- uaGGCCGU---UUGCGCUuaCGCGCUU-AG- -5'
24904 3' -52.3 NC_005284.1 + 53374 0.66 0.814083
Target:  5'- uAUCCuGCuagcuguGCGCGGAUGCcaGCGAcGUCg -3'
miRNA:   3'- -UAGGcCGuu-----UGCGCUUACG--CGCU-UAG- -5'
24904 3' -52.3 NC_005284.1 + 53076 0.67 0.804309
Target:  5'- --gCGGCAAACGCG-AUGCccaccGCGAu-- -3'
miRNA:   3'- uagGCCGUUUGCGCuUACG-----CGCUuag -5'
24904 3' -52.3 NC_005284.1 + 21334 0.67 0.804309
Target:  5'- -aCUGGCgGGGCGCGuGUcGCGCG-AUCa -3'
miRNA:   3'- uaGGCCG-UUUGCGCuUA-CGCGCuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.