miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 5' -52.4 NC_005284.1 + 11804 0.66 0.872412
Target:  5'- gGCCGAggcggagcAGGuCGCGCGcGAGCgCGGCUa- -3'
miRNA:   3'- -CGGCU--------UCC-GCGUGUcUUUG-GCUGAag -5'
24905 5' -52.4 NC_005284.1 + 16400 0.66 0.871607
Target:  5'- uGCUGAAGGCGgGguGAAGCgcaucuaCGGCg-- -3'
miRNA:   3'- -CGGCUUCCGCgUguCUUUG-------GCUGaag -5'
24905 5' -52.4 NC_005284.1 + 18856 0.66 0.864253
Target:  5'- uGUCGAccAGGCGCGCccAGAAAuaaaacaccugcCCGACcgCg -3'
miRNA:   3'- -CGGCU--UCCGCGUG--UCUUU------------GGCUGaaG- -5'
24905 5' -52.4 NC_005284.1 + 49514 0.66 0.864253
Target:  5'- gGCCGGucgAGGuCGC-CGG-AugCGAUUUCg -3'
miRNA:   3'- -CGGCU---UCC-GCGuGUCuUugGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 21908 0.66 0.864253
Target:  5'- cGCCGgcGGCGC-UGGAAgcGCCGGg--- -3'
miRNA:   3'- -CGGCuuCCGCGuGUCUU--UGGCUgaag -5'
24905 5' -52.4 NC_005284.1 + 13236 0.66 0.864253
Target:  5'- gGCaCGGAcGaCGCgaGCGGAAAcCCGACUUCc -3'
miRNA:   3'- -CG-GCUUcC-GCG--UGUCUUU-GGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 16720 0.66 0.863423
Target:  5'- cGCCGuGGGUGCGCcaaauccAGAauacgcAACUGACUg- -3'
miRNA:   3'- -CGGCuUCCGCGUG-------UCU------UUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 21559 0.66 0.855842
Target:  5'- uGCCGAcgagcAGGcCGCGCGGGcguUCGACg-- -3'
miRNA:   3'- -CGGCU-----UCC-GCGUGUCUuu-GGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 33452 0.66 0.855842
Target:  5'- aGCCGucGGCaGCGCc--GGCCGACg-- -3'
miRNA:   3'- -CGGCuuCCG-CGUGucuUUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 18839 0.66 0.855842
Target:  5'- gGCCG--GGCGUGCAGGggcAGCCGAg--- -3'
miRNA:   3'- -CGGCuuCCGCGUGUCU---UUGGCUgaag -5'
24905 5' -52.4 NC_005284.1 + 17885 0.66 0.855842
Target:  5'- cGCCGGaucggcGGGCGCauccgcGCAGcgGCUGGCg-- -3'
miRNA:   3'- -CGGCU------UCCGCG------UGUCuuUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 25357 0.66 0.847187
Target:  5'- uUCGGAGaGCGCcuCAGAAACCG-CUc- -3'
miRNA:   3'- cGGCUUC-CGCGu-GUCUUUGGCuGAag -5'
24905 5' -52.4 NC_005284.1 + 21695 0.66 0.838296
Target:  5'- cGUCGAGcgcGGCGCGCgAGAucuuGCCcaacGCUUCg -3'
miRNA:   3'- -CGGCUU---CCGCGUG-UCUu---UGGc---UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 30536 0.66 0.838296
Target:  5'- cGCCGGccGGCaGCACAcGAAUCGGCgacUCg -3'
miRNA:   3'- -CGGCUu-CCG-CGUGUcUUUGGCUGa--AG- -5'
24905 5' -52.4 NC_005284.1 + 9916 0.66 0.838296
Target:  5'- cGCCGcguAGGGCGUGCccguGAugcgcgcGCCGAUUUCc -3'
miRNA:   3'- -CGGC---UUCCGCGUGu---CUu------UGGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 38908 0.66 0.829179
Target:  5'- cCCGcAGGGCGgGCGGGuugguuAGgCGGCUUCc -3'
miRNA:   3'- cGGC-UUCCGCgUGUCU------UUgGCUGAAG- -5'
24905 5' -52.4 NC_005284.1 + 32859 0.66 0.829179
Target:  5'- gGCCGAcgcaccggcagAGGCGCGCG--AGCgCGACg-- -3'
miRNA:   3'- -CGGCU-----------UCCGCGUGUcuUUG-GCUGaag -5'
24905 5' -52.4 NC_005284.1 + 33541 0.66 0.829179
Target:  5'- gGCCGAcGGCGCguguaagcacuGCGGA--UCGACUa- -3'
miRNA:   3'- -CGGCUuCCGCG-----------UGUCUuuGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 10677 0.66 0.828255
Target:  5'- cGCCGcGGGCGCgaucgacACGGcGGGCCucGCUUCg -3'
miRNA:   3'- -CGGCuUCCGCG-------UGUC-UUUGGc-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 27597 0.67 0.819845
Target:  5'- gGCCGAGGGCaaaGCGCc---GCCGAUUa- -3'
miRNA:   3'- -CGGCUUCCG---CGUGucuuUGGCUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.