miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 45430 0.66 0.657519
Target:  5'- gGCGAcgauauucGCGGCGUCGcGAUuGuCGGGCGa -3'
miRNA:   3'- gCGCU--------UGCUGCGGCuCUA-C-GUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 50248 0.66 0.657519
Target:  5'- aCGCGAacgGCGACGCUGAagcGUcagaAGGCGa -3'
miRNA:   3'- -GCGCU---UGCUGCGGCUcuaCG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 31339 0.66 0.646813
Target:  5'- gGCGAGCGACGCgcAGAacacgcgcUGUcGGUGGc -3'
miRNA:   3'- gCGCUUGCUGCGgcUCU--------ACGuCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 7463 0.66 0.636094
Target:  5'- uCGCGAGCGACGaaaaggaauCCGAGcucgGCuugcccgauccGGGCGa -3'
miRNA:   3'- -GCGCUUGCUGC---------GGCUCua--CG-----------UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 30660 0.66 0.636094
Target:  5'- uGCGuGCGGcCGUCGAGcagccgGCcGGCGGc -3'
miRNA:   3'- gCGCuUGCU-GCGGCUCua----CGuCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 25922 0.66 0.636094
Target:  5'- gCGCGccgcuuaGAUGCCGuucaagGUAGGCGGg -3'
miRNA:   3'- -GCGCuug----CUGCGGCucua--CGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 11946 0.66 0.621084
Target:  5'- gCGCuGACGAguucguuccgcaaUGCCGAGGUGCAcucgugucguucgcGGCGu -3'
miRNA:   3'- -GCGcUUGCU-------------GCGGCUCUACGU--------------CCGCc -5'
24907 5' -57.2 NC_005284.1 + 31598 0.66 0.614655
Target:  5'- uCGCucACGAuuUGCUcccuuGGGUGCGGGCGGc -3'
miRNA:   3'- -GCGcuUGCU--GCGGc----UCUACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 34039 0.66 0.614655
Target:  5'- cCGC-AGCaGCGCCGGccgacGA-GCGGGCGGc -3'
miRNA:   3'- -GCGcUUGcUGCGGCU-----CUaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 21347 0.66 0.614655
Target:  5'- gGCGcGCGGC-CCGAuguUGUAGGCGa -3'
miRNA:   3'- gCGCuUGCUGcGGCUcu-ACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 53638 0.66 0.614655
Target:  5'- aGaCGAGCGACauuGCguuaCGAcuGUGCAGGCGGc -3'
miRNA:   3'- gC-GCUUGCUG---CG----GCUc-UACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 19418 0.66 0.614655
Target:  5'- nGUGAucgGCG-CGCCGuucguuGUGCAaGGCGGg -3'
miRNA:   3'- gCGCU---UGCuGCGGCuc----UACGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 46771 0.67 0.608231
Target:  5'- aCGgGAACGGucacgggauggugcuUGCCGg---GCAGGCGGc -3'
miRNA:   3'- -GCgCUUGCU---------------GCGGCucuaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 9739 0.67 0.603953
Target:  5'- aGCGAAgcuUGCCGAagcGCGGGCGGu -3'
miRNA:   3'- gCGCUUgcuGCGGCUcuaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 8421 0.67 0.600746
Target:  5'- uGuCGGACauGAUGCCGAGAUgguccggcgagcccGCGacGGCGGa -3'
miRNA:   3'- gC-GCUUG--CUGCGGCUCUA--------------CGU--CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 4011 0.67 0.599678
Target:  5'- gCGCGAAuCGACGCgGuGAaaucgaucaucgcGCAcGGCGGa -3'
miRNA:   3'- -GCGCUU-GCUGCGgCuCUa------------CGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 10456 0.67 0.58688
Target:  5'- aCGCGGGCGGCgcaaagugucaugguGCCGAcguuuggcGAUGCGccgucGGUGGu -3'
miRNA:   3'- -GCGCUUGCUG---------------CGGCU--------CUACGU-----CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 11015 0.67 0.582625
Target:  5'- gGCG-ACGAgGCCGGccAUGCGGGCc- -3'
miRNA:   3'- gCGCuUGCUgCGGCUc-UACGUCCGcc -5'
24907 5' -57.2 NC_005284.1 + 51396 0.67 0.582625
Target:  5'- aGCGGGCucGACGCgGcGGAagUGCGGGCa- -3'
miRNA:   3'- gCGCUUG--CUGCGgC-UCU--ACGUCCGcc -5'
24907 5' -57.2 NC_005284.1 + 47852 0.67 0.582625
Target:  5'- cCGCGAGCGcCGCCucGAucUGCuuacGCGGa -3'
miRNA:   3'- -GCGCUUGCuGCGGcuCU--ACGuc--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.