miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24913 3' -48.3 NC_005284.1 + 11581 0.66 0.984169
Target:  5'- -aGAUCGACGcgGAGCucgGCGacUAcGCGGCc -3'
miRNA:   3'- ugCUAGCUGU--UUCG---CGCa-AUaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 30698 0.66 0.984169
Target:  5'- -aGAUCGAUgaaAGAGCGUccgaucuaGUUcaGCGGCc -3'
miRNA:   3'- ugCUAGCUG---UUUCGCG--------CAAuaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 45014 0.66 0.984169
Target:  5'- gGCGggCGAuacacCGAGGCGCG--GUGCGaGUg -3'
miRNA:   3'- -UGCuaGCU-----GUUUCGCGCaaUAUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 46276 0.66 0.984169
Target:  5'- cACGAcUCGGgAGgcuGCGCGUU---CGGCg -3'
miRNA:   3'- -UGCU-AGCUgUUu--CGCGCAAuauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 17314 0.66 0.984169
Target:  5'- gAUGGUCGAUAAGuGgGCGcUGUAC-GCa -3'
miRNA:   3'- -UGCUAGCUGUUU-CgCGCaAUAUGcCG- -5'
24913 3' -48.3 NC_005284.1 + 31603 0.66 0.984169
Target:  5'- cACGAUUuGCucccuuGGGUGCGg---GCGGCg -3'
miRNA:   3'- -UGCUAGcUGu-----UUCGCGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 3247 0.66 0.983963
Target:  5'- gACGGUcccugcugaggcCGGgAGAGCGCGaucaguuUUAUGCGGa -3'
miRNA:   3'- -UGCUA------------GCUgUUUCGCGC-------AAUAUGCCg -5'
24913 3' -48.3 NC_005284.1 + 3830 0.66 0.983545
Target:  5'- -gGAUCGACGAAGCGCcgaacgcaaggaucGcgUAUcGCGGa -3'
miRNA:   3'- ugCUAGCUGUUUCGCG--------------Ca-AUA-UGCCg -5'
24913 3' -48.3 NC_005284.1 + 30401 0.66 0.983333
Target:  5'- cUGGUCGGCAugucgaucgucCGCGUgcgcgACGGCg -3'
miRNA:   3'- uGCUAGCUGUuuc--------GCGCAaua--UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 1364 0.66 0.982903
Target:  5'- gACGAUCGACGaagggGAcgauuggaccgauccGCGCGUgc--UGGCg -3'
miRNA:   3'- -UGCUAGCUGU-----UU---------------CGCGCAauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 37691 0.66 0.982017
Target:  5'- cCGGUaaaaaaUGGCGGGGCGCGc-AUACGGg -3'
miRNA:   3'- uGCUA------GCUGUUUCGCGCaaUAUGCCg -5'
24913 3' -48.3 NC_005284.1 + 4664 0.66 0.982017
Target:  5'- uGCGAUCGACGcgAAcGCGCacugauuUGCGcGCg -3'
miRNA:   3'- -UGCUAGCUGU--UU-CGCGcaau---AUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 32992 0.66 0.979653
Target:  5'- gGCGAaCGACGAAGCGaug-AU-CGGUc -3'
miRNA:   3'- -UGCUaGCUGUUUCGCgcaaUAuGCCG- -5'
24913 3' -48.3 NC_005284.1 + 9607 0.66 0.979653
Target:  5'- cGCGG-CGGCGAAGCuucagaacGCGcaa-GCGGCg -3'
miRNA:   3'- -UGCUaGCUGUUUCG--------CGCaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 45050 0.66 0.979653
Target:  5'- cGCGAUUcuCGAAGCGUGg---GCGGg -3'
miRNA:   3'- -UGCUAGcuGUUUCGCGCaauaUGCCg -5'
24913 3' -48.3 NC_005284.1 + 9490 0.66 0.979653
Target:  5'- gGCGAcgcaggCGGCGAcAGCGUGggu--CGGCg -3'
miRNA:   3'- -UGCUa-----GCUGUU-UCGCGCaauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 37796 0.66 0.979653
Target:  5'- cGCGGccuuUCGGCGGGGCGgCccgUAUGCGcGCc -3'
miRNA:   3'- -UGCU----AGCUGUUUCGC-Gca-AUAUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 16062 0.66 0.977065
Target:  5'- --cGUCGGCAguAAGCGCGg---GgGGCu -3'
miRNA:   3'- ugcUAGCUGU--UUCGCGCaauaUgCCG- -5'
24913 3' -48.3 NC_005284.1 + 8455 0.66 0.977065
Target:  5'- cGCGA-CGGCGGAGgGagaGgaagGCGGCg -3'
miRNA:   3'- -UGCUaGCUGUUUCgCg--CaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 21372 0.66 0.977065
Target:  5'- aACGGUCGGCcgcAGUGgGUgacUGCuGGCg -3'
miRNA:   3'- -UGCUAGCUGuu-UCGCgCAau-AUG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.