miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 26604 0.66 0.817395
Target:  5'- aCGGGA-GCGGCGCggCGA-ACuGCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGuaGUUgUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 53998 0.66 0.817395
Target:  5'- cUCGaAGAUGaAGCGC-UCuacGCGCaGGCCa -3'
miRNA:   3'- -GGC-UCUACgUCGCGuAGu--UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 2101 0.66 0.817395
Target:  5'- gCCGGGAaaugacgaugUGguGCGCccgAUCaAGCAgGGCa -3'
miRNA:   3'- -GGCUCU----------ACguCGCG---UAG-UUGUgCCGg -5'
24919 3' -53.8 NC_005284.1 + 8006 0.66 0.807963
Target:  5'- cCCGGcGAUGUcccgaAGCGCuUCGAUccagaacauGCGGUCg -3'
miRNA:   3'- -GGCU-CUACG-----UCGCGuAGUUG---------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11806 0.66 0.807963
Target:  5'- nCGAGGcggaGCAggucGCGCGcgAGCGCGGCUa -3'
miRNA:   3'- gGCUCUa---CGU----CGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48149 0.66 0.807963
Target:  5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3'
miRNA:   3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5'
24919 3' -53.8 NC_005284.1 + 11139 0.66 0.807009
Target:  5'- uUCGAGAaauucggcuucaaUGCuGaCGCAgcucgCGcCGCGGCCg -3'
miRNA:   3'- -GGCUCU-------------ACGuC-GCGUa----GUuGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21659 0.66 0.798345
Target:  5'- gCCGcgcacGAUGCcGcCGCGUCGGCgguGGCCg -3'
miRNA:   3'- -GGCu----CUACGuC-GCGUAGUUGug-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 15404 0.66 0.798345
Target:  5'- gCCGGGAgGCuacGuCGCG-CGACuaguCGGCCg -3'
miRNA:   3'- -GGCUCUaCGu--C-GCGUaGUUGu---GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34184 0.66 0.798345
Target:  5'- aUCGGcGUGCAGUuuuacgGUGUCGGCACGGaaCCg -3'
miRNA:   3'- -GGCUcUACGUCG------CGUAGUUGUGCC--GG- -5'
24919 3' -53.8 NC_005284.1 + 16295 0.66 0.798345
Target:  5'- gCGAGGccggccuguUGCGGacugaGCAUCuGCACGauGCCg -3'
miRNA:   3'- gGCUCU---------ACGUCg----CGUAGuUGUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 19038 0.66 0.797374
Target:  5'- gCCGAGGgcgauaugGCGGuCGCGaagaaagUCGAaacaguCGCGGCCc -3'
miRNA:   3'- -GGCUCUa-------CGUC-GCGU-------AGUU------GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 14586 0.66 0.795425
Target:  5'- gCGAuGGcUGCuGCGCGUCGgaugucugcucgaaGCccGCGGCCu -3'
miRNA:   3'- gGCU-CU-ACGuCGCGUAGU--------------UG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1275 0.66 0.788552
Target:  5'- aUCGAGggGCcGUGCuUCGACAaGcGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGuAGUUGUgC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 47545 0.66 0.788552
Target:  5'- gUCGAGcAUGCgAGC-CAUCuuCuCGGCCc -3'
miRNA:   3'- -GGCUC-UACG-UCGcGUAGuuGuGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21338 0.66 0.785581
Target:  5'- gCGGGgcGCGugucGCGCgAUCAACGagucggacaacgguCGGCCg -3'
miRNA:   3'- gGCUCuaCGU----CGCG-UAGUUGU--------------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 16971 0.66 0.778594
Target:  5'- uCCGc-GUGCGcCGCAUCAcgccgaacgcgcACACGGCg -3'
miRNA:   3'- -GGCucUACGUcGCGUAGU------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 48063 0.66 0.778594
Target:  5'- gCCGG--UGCGcuGCGCAUUAcGCGcCGGCCc -3'
miRNA:   3'- -GGCUcuACGU--CGCGUAGU-UGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23739 0.66 0.778594
Target:  5'- aCGAGAUGCAGaauugaucgcccCGUAcagugcccgUGACGCGGUCg -3'
miRNA:   3'- gGCUCUACGUC------------GCGUa--------GUUGUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.