miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24956 3' -56.3 NC_005284.1 + 31075 0.66 0.636914
Target:  5'- cACGCACGGCGGCaa-GCGCCaGUu-- -3'
miRNA:   3'- -UGCGUGUUGUUGgagCGCGGcCGuaa -5'
24956 3' -56.3 NC_005284.1 + 40816 0.66 0.636914
Target:  5'- cCGCACAGCcuuACUauugcgugCGCGuCCGGCAc- -3'
miRNA:   3'- uGCGUGUUGu--UGGa-------GCGC-GGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 22624 0.66 0.636914
Target:  5'- gAUGCGCAGCAGgUUCagGC-CCGGCAc- -3'
miRNA:   3'- -UGCGUGUUGUUgGAG--CGcGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 15302 0.66 0.636914
Target:  5'- cCGCACGAUGugCggGCGCagCGGCAUc -3'
miRNA:   3'- uGCGUGUUGUugGagCGCG--GCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 31239 0.66 0.631357
Target:  5'- uGCGCuucgucaGCAACAACCagucgagguuuggCGUGUCGGCGa- -3'
miRNA:   3'- -UGCG-------UGUUGUUGGa------------GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 19802 0.66 0.625799
Target:  5'- aGCGCgGCGGCAGaucUCUCGCGCgGGgAa- -3'
miRNA:   3'- -UGCG-UGUUGUU---GGAGCGCGgCCgUaa -5'
24956 3' -56.3 NC_005284.1 + 34060 0.66 0.61469
Target:  5'- cCGCACccccugucgAGCAGCCcgcagcaGCGCCGGCc-- -3'
miRNA:   3'- uGCGUG---------UUGUUGGag-----CGCGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 49044 0.66 0.61469
Target:  5'- cCGCGCAGCAccGCUUCGUcgaugcaguccGCCggGGCAUg -3'
miRNA:   3'- uGCGUGUUGU--UGGAGCG-----------CGG--CCGUAa -5'
24956 3' -56.3 NC_005284.1 + 12032 0.66 0.61469
Target:  5'- -aGCAUGAucgcCGACCUCGCGCgguuuuCGGCGc- -3'
miRNA:   3'- ugCGUGUU----GUUGGAGCGCG------GCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 45293 0.66 0.61469
Target:  5'- cACGCGCu-CGAUCUCGUGCCGu---- -3'
miRNA:   3'- -UGCGUGuuGUUGGAGCGCGGCcguaa -5'
24956 3' -56.3 NC_005284.1 + 54767 0.66 0.603596
Target:  5'- cACGuCACcGCAACCgcucgCGCGCCGucuucgccGCGUg -3'
miRNA:   3'- -UGC-GUGuUGUUGGa----GCGCGGC--------CGUAa -5'
24956 3' -56.3 NC_005284.1 + 33864 0.66 0.603596
Target:  5'- -gGCGCGAuCGACUacgaagUCgGCGCCGGCGc- -3'
miRNA:   3'- ugCGUGUU-GUUGG------AG-CGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 10137 0.66 0.603596
Target:  5'- gGCGCA-GACGGCgCUCGCGCguacgGGCAc- -3'
miRNA:   3'- -UGCGUgUUGUUG-GAGCGCGg----CCGUaa -5'
24956 3' -56.3 NC_005284.1 + 53695 0.66 0.603596
Target:  5'- -gGCACGGCAAg--UGCGCUGGCGa- -3'
miRNA:   3'- ugCGUGUUGUUggaGCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 45161 0.66 0.603596
Target:  5'- gACGCACGGCGACgUCGgGCaGGa--- -3'
miRNA:   3'- -UGCGUGUUGUUGgAGCgCGgCCguaa -5'
24956 3' -56.3 NC_005284.1 + 16222 0.66 0.603596
Target:  5'- cCGCaACAGgcCGGCCUCGCGgggaCGGCGa- -3'
miRNA:   3'- uGCG-UGUU--GUUGGAGCGCg---GCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 47606 0.66 0.592527
Target:  5'- aGCGCACGGuCGgcACCUCGaCGCCgaacacgacGGCGa- -3'
miRNA:   3'- -UGCGUGUU-GU--UGGAGC-GCGG---------CCGUaa -5'
24956 3' -56.3 NC_005284.1 + 21587 0.66 0.592527
Target:  5'- gACGCGCAGCGgcauGCCgaaGCGuuGGgCAa- -3'
miRNA:   3'- -UGCGUGUUGU----UGGag-CGCggCC-GUaa -5'
24956 3' -56.3 NC_005284.1 + 15474 0.66 0.592527
Target:  5'- gUGCGCGACugguAUCUCGCcgaGCgCGGCGUc -3'
miRNA:   3'- uGCGUGUUGu---UGGAGCG---CG-GCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 10011 0.66 0.581492
Target:  5'- gACGgACcGCGGCCUUGCgcaaGCCGaGCGUg -3'
miRNA:   3'- -UGCgUGuUGUUGGAGCG----CGGC-CGUAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.