miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 5' -52.8 NC_005284.1 + 35661 0.66 0.860846
Target:  5'- aCGAUGCCgu-UCGC--GCGCGgUGUCg -3'
miRNA:   3'- -GCUGCGGacuAGUGuaUGUGCgACGG- -5'
24957 5' -52.8 NC_005284.1 + 47992 0.66 0.860846
Target:  5'- uCGACGCCauugcgGAauUCGCGggcgugACGCGCgUGaCCg -3'
miRNA:   3'- -GCUGCGGa-----CU--AGUGUa-----UGUGCG-AC-GG- -5'
24957 5' -52.8 NC_005284.1 + 3055 0.66 0.860846
Target:  5'- -cGCGCCgcGAUCuuucCGUACACGC-GCUu -3'
miRNA:   3'- gcUGCGGa-CUAGu---GUAUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 43152 0.66 0.852396
Target:  5'- gGACGUCUGcgGUgACAUugACGaC-GCCg -3'
miRNA:   3'- gCUGCGGAC--UAgUGUAugUGC-GaCGG- -5'
24957 5' -52.8 NC_005284.1 + 15443 0.66 0.852396
Target:  5'- aGACGCgCUGccaaGCAUGCGagcgUGCUGCg -3'
miRNA:   3'- gCUGCG-GACuag-UGUAUGU----GCGACGg -5'
24957 5' -52.8 NC_005284.1 + 19622 0.66 0.851538
Target:  5'- -uGCGCCgcGAUCGCAcacggcaUACaACGgaGCCg -3'
miRNA:   3'- gcUGCGGa-CUAGUGU-------AUG-UGCgaCGG- -5'
24957 5' -52.8 NC_005284.1 + 54165 0.66 0.850677
Target:  5'- uGGCGCUUGcacgcaaguugCACAUACcggcacgcaggGCGCuUGCCa -3'
miRNA:   3'- gCUGCGGACua---------GUGUAUG-----------UGCG-ACGG- -5'
24957 5' -52.8 NC_005284.1 + 32892 0.66 0.843709
Target:  5'- gCGACGCCgaaaaCGCGUuccGCAacCGCUGCg -3'
miRNA:   3'- -GCUGCGGacua-GUGUA---UGU--GCGACGg -5'
24957 5' -52.8 NC_005284.1 + 33262 0.66 0.843709
Target:  5'- -uGCGCC-GAUCAgGUGCucgacgcaaGCGCcgGCCg -3'
miRNA:   3'- gcUGCGGaCUAGUgUAUG---------UGCGa-CGG- -5'
24957 5' -52.8 NC_005284.1 + 40861 0.66 0.843709
Target:  5'- cCGACGCCUGGUuaaaauucgaCGCAgacaACACGCcaaacgaaGUCg -3'
miRNA:   3'- -GCUGCGGACUA----------GUGUa---UGUGCGa-------CGG- -5'
24957 5' -52.8 NC_005284.1 + 28531 0.66 0.843709
Target:  5'- -aGCGCCU--UCACGUcauacccgGCACGUUcGCCa -3'
miRNA:   3'- gcUGCGGAcuAGUGUA--------UGUGCGA-CGG- -5'
24957 5' -52.8 NC_005284.1 + 42345 0.66 0.843709
Target:  5'- aCGAucCGCCcucGAUCGaaacugGCGCGCUGaCCg -3'
miRNA:   3'- -GCU--GCGGa--CUAGUgua---UGUGCGAC-GG- -5'
24957 5' -52.8 NC_005284.1 + 33179 0.66 0.838387
Target:  5'- gCGGCGCgCgaGAUCuugcccaacgcuucgGCAUGC-CGCUGCg -3'
miRNA:   3'- -GCUGCG-Ga-CUAG---------------UGUAUGuGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 25890 0.67 0.816314
Target:  5'- cCGAUGCCU--UCGCAaaacuguucuUugAUGCUGCg -3'
miRNA:   3'- -GCUGCGGAcuAGUGU----------AugUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 17304 0.67 0.816314
Target:  5'- uCGAUGCUucgaUGGUCGauaaGUGgGCGCUGUa -3'
miRNA:   3'- -GCUGCGG----ACUAGUg---UAUgUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 16003 0.67 0.815369
Target:  5'- uCGAgCGCCaUGAUCGCAacUACuuCGCcggacauUGCCu -3'
miRNA:   3'- -GCU-GCGG-ACUAGUGU--AUGu-GCG-------ACGG- -5'
24957 5' -52.8 NC_005284.1 + 14615 0.67 0.797039
Target:  5'- cCGGCGCC-GAaCGCucGCGCGCUaccucgacGCCg -3'
miRNA:   3'- -GCUGCGGaCUaGUGuaUGUGCGA--------CGG- -5'
24957 5' -52.8 NC_005284.1 + 33443 0.67 0.797039
Target:  5'- cCGACuCgUUGAUCGCGcgACACGCgccccGCCa -3'
miRNA:   3'- -GCUGcG-GACUAGUGUa-UGUGCGa----CGG- -5'
24957 5' -52.8 NC_005284.1 + 4549 0.67 0.797039
Target:  5'- gCGuCGCCgu-UCGCGU-CAgGCUGCUg -3'
miRNA:   3'- -GCuGCGGacuAGUGUAuGUgCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 23898 0.67 0.797039
Target:  5'- cCGACuggGCUcGGUCGC-UGCgcgaccaguGCGCUGCCg -3'
miRNA:   3'- -GCUG---CGGaCUAGUGuAUG---------UGCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.