miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24958 3' -55.5 NC_005284.1 + 49002 0.66 0.739418
Target:  5'- uCGAGCGAAaCGAUCGgCGUUugGUCGGc -3'
miRNA:   3'- -GCUUGCUUgGCUAGCgGCAG--CGGCUu -5'
24958 3' -55.5 NC_005284.1 + 12467 0.66 0.738378
Target:  5'- uCGAaccccGCGAGCCuGAUCGCgGUUGgggaguuCCGAAa -3'
miRNA:   3'- -GCU-----UGCUUGG-CUAGCGgCAGC-------GGCUU- -5'
24958 3' -55.5 NC_005284.1 + 21608 0.66 0.728972
Target:  5'- -aAGgGAACCGAUCGaCGUCG-CGAGg -3'
miRNA:   3'- gcUUgCUUGGCUAGCgGCAGCgGCUU- -5'
24958 3' -55.5 NC_005284.1 + 28687 0.66 0.728972
Target:  5'- uGGGCuuGCCGAUgGCUGUCaGCCa-- -3'
miRNA:   3'- gCUUGcuUGGCUAgCGGCAG-CGGcuu -5'
24958 3' -55.5 NC_005284.1 + 16101 0.66 0.718431
Target:  5'- aCGuccauCGAGCCuuUCGCCG-CGUCGAc -3'
miRNA:   3'- -GCuu---GCUUGGcuAGCGGCaGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 7041 0.66 0.718431
Target:  5'- gCGGACGuACgCGcgcCGCCGUacCGCCGAGc -3'
miRNA:   3'- -GCUUGCuUG-GCua-GCGGCA--GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 17922 0.66 0.718431
Target:  5'- aGAACGAACUGcgUGCa---GCCGAGg -3'
miRNA:   3'- gCUUGCUUGGCuaGCGgcagCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 42713 0.66 0.707806
Target:  5'- cCGAuCGcuCCGAacaccugagacaUCGCCGcacgCGCCGAAa -3'
miRNA:   3'- -GCUuGCuuGGCU------------AGCGGCa---GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 53977 0.66 0.707806
Target:  5'- uGAGCcAGCCGAacgUCGCCaUCagGCCGAAc -3'
miRNA:   3'- gCUUGcUUGGCU---AGCGGcAG--CGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 11698 0.66 0.707806
Target:  5'- uGAGCGA--CGAguuUCGCCGUCGaCGGGa -3'
miRNA:   3'- gCUUGCUugGCU---AGCGGCAGCgGCUU- -5'
24958 3' -55.5 NC_005284.1 + 30429 0.66 0.707806
Target:  5'- gCGAcgGCGAgguGCUGuuUCGCgaGUCGCCGAu -3'
miRNA:   3'- -GCU--UGCU---UGGCu-AGCGg-CAGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 13774 0.66 0.694961
Target:  5'- uGAACGuccuccgcgaCGAUCGCCGUuccagcaaUGCCGGGg -3'
miRNA:   3'- gCUUGCuug-------GCUAGCGGCA--------GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 52613 0.67 0.675538
Target:  5'- aGAgcGCGGGCUGAauUUGCCGcCGCaCGGAu -3'
miRNA:   3'- gCU--UGCUUGGCU--AGCGGCaGCG-GCUU- -5'
24958 3' -55.5 NC_005284.1 + 42265 0.67 0.675538
Target:  5'- uGGGCGAgugugcGCCGGUCGUCGagGUCGu- -3'
miRNA:   3'- gCUUGCU------UGGCUAGCGGCagCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 32961 0.67 0.664687
Target:  5'- -cGGCGGcgcuggaagcGCCGGgcaCGCCGUCGCCa-- -3'
miRNA:   3'- gcUUGCU----------UGGCUa--GCGGCAGCGGcuu -5'
24958 3' -55.5 NC_005284.1 + 50289 0.67 0.664687
Target:  5'- gCGGAUcAAgCGGcCGaCCGUCGCCGAGg -3'
miRNA:   3'- -GCUUGcUUgGCUaGC-GGCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 47697 0.67 0.658162
Target:  5'- aCGAuCGAcugccaagucggcaaGCCGAUCGgCGUCGgUGAAc -3'
miRNA:   3'- -GCUuGCU---------------UGGCUAGCgGCAGCgGCUU- -5'
24958 3' -55.5 NC_005284.1 + 53841 0.67 0.653806
Target:  5'- uCGAACGGGgUGAUCGCC--CGCCa-- -3'
miRNA:   3'- -GCUUGCUUgGCUAGCGGcaGCGGcuu -5'
24958 3' -55.5 NC_005284.1 + 30805 0.67 0.653806
Target:  5'- cCGGAuCGucCCGAUCGCgGUCGUaggCGAGa -3'
miRNA:   3'- -GCUU-GCuuGGCUAGCGgCAGCG---GCUU- -5'
24958 3' -55.5 NC_005284.1 + 35527 0.67 0.653806
Target:  5'- aGAGCGAuucCCGuGUCGCgGUCgcgaggucgaGCCGAAg -3'
miRNA:   3'- gCUUGCUu--GGC-UAGCGgCAG----------CGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.