miRNA display CGI


Results 1 - 20 of 498 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25033 3' -55.7 NC_005336.1 + 120136 0.66 0.903934
Target:  5'- cGCgGCGGCUGuACGCgcgcgugguCGCCGaGCACCCu -3'
miRNA:   3'- -UGgUGUCGGU-UGUG---------GUGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 34897 0.66 0.896803
Target:  5'- cGCCGCGGCggCGGCccucguugGCCuGCCGgauagcuuggucuUGCGCCCg -3'
miRNA:   3'- -UGGUGUCG--GUUG--------UGG-UGGU-------------ACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 87686 0.66 0.893467
Target:  5'- uCCGCAGCCugcGCGCCgucgaagccucgcucGCgCAUGaGCCCc -3'
miRNA:   3'- uGGUGUCGGu--UGUGG---------------UG-GUACgUGGG- -5'
25033 3' -55.7 NC_005336.1 + 136197 1.1 0.00202
Target:  5'- cACCACAGCCAACACCACCAUGCACCCc -3'
miRNA:   3'- -UGGUGUCGGUUGUGGUGGUACGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 7348 0.66 0.903934
Target:  5'- uGCCGCGGCa---GCCGCgggCGUGCgaggucGCCCg -3'
miRNA:   3'- -UGGUGUCGguugUGGUG---GUACG------UGGG- -5'
25033 3' -55.7 NC_005336.1 + 5316 0.66 0.903934
Target:  5'- aGCgCGCGGCgCAGCagcgaaauuGCCACCAcgccgaGCACCg -3'
miRNA:   3'- -UG-GUGUCG-GUUG---------UGGUGGUa-----CGUGGg -5'
25033 3' -55.7 NC_005336.1 + 30326 0.66 0.903934
Target:  5'- cGCCuggACAGCUAcCACCGCuucgaCAUGCugCg -3'
miRNA:   3'- -UGG---UGUCGGUuGUGGUG-----GUACGugGg -5'
25033 3' -55.7 NC_005336.1 + 5475 0.66 0.903934
Target:  5'- uUCGCGGCCgcGugGCCGCUGUuCACCa -3'
miRNA:   3'- uGGUGUCGG--UugUGGUGGUAcGUGGg -5'
25033 3' -55.7 NC_005336.1 + 24081 0.66 0.897464
Target:  5'- cGCCACGGCCucguACggcgggucgAUCGCCA-GCGCgCg -3'
miRNA:   3'- -UGGUGUCGGu---UG---------UGGUGGUaCGUGgG- -5'
25033 3' -55.7 NC_005336.1 + 44066 0.66 0.897464
Target:  5'- gUCAUGGCCAgccGCugCGCgGUggagccugacGCGCCCg -3'
miRNA:   3'- uGGUGUCGGU---UGugGUGgUA----------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 101785 0.66 0.897464
Target:  5'- -aCACGGCCAugggaACGCgCGCCGU-CGCUCc -3'
miRNA:   3'- ugGUGUCGGU-----UGUG-GUGGUAcGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 101714 0.66 0.900081
Target:  5'- gACgCugAGCCAcacgcuucgcucgucGCGCUggaGCCGcGCGCCCc -3'
miRNA:   3'- -UG-GugUCGGU---------------UGUGG---UGGUaCGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 109111 0.66 0.903934
Target:  5'- gGCCACGggcucgcguGCCGACACUucgACC-UGCGCa- -3'
miRNA:   3'- -UGGUGU---------CGGUUGUGG---UGGuACGUGgg -5'
25033 3' -55.7 NC_005336.1 + 52813 0.66 0.897464
Target:  5'- -gCGCAGCCAgGCGCaCACCGa-CACCUu -3'
miRNA:   3'- ugGUGUCGGU-UGUG-GUGGUacGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 96096 0.66 0.903934
Target:  5'- aGCaGCGGCCAGCGCCcgcaacgcgcgGCCucgGCGCguCCa -3'
miRNA:   3'- -UGgUGUCGGUUGUGG-----------UGGua-CGUG--GG- -5'
25033 3' -55.7 NC_005336.1 + 71498 0.66 0.903298
Target:  5'- uGCCGCGcgcGCCAGCACgCACgcccgcagcggcuCAUcgcgcGCGCCCc -3'
miRNA:   3'- -UGGUGU---CGGUUGUG-GUG-------------GUA-----CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 115617 0.66 0.897464
Target:  5'- gUCGCGGUagaagGAgGCCGCCAUGCAgCg -3'
miRNA:   3'- uGGUGUCGg----UUgUGGUGGUACGUgGg -5'
25033 3' -55.7 NC_005336.1 + 62424 0.66 0.895476
Target:  5'- cGCCGCccgcgcggcgcucGGCCcGCACCugCAcuucccgcggcgGCGCCUg -3'
miRNA:   3'- -UGGUG-------------UCGGuUGUGGugGUa-----------CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 13638 0.66 0.903934
Target:  5'- cAUCugGGCCGcuGCGCCGaggaCGUcGCGCUCu -3'
miRNA:   3'- -UGGugUCGGU--UGUGGUg---GUA-CGUGGG- -5'
25033 3' -55.7 NC_005336.1 + 102920 0.66 0.903934
Target:  5'- uUCAUgauCCuguGCACCAUCAaGCACCCg -3'
miRNA:   3'- uGGUGuc-GGu--UGUGGUGGUaCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.