miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25035 5' -58.6 NC_005336.1 + 116595 0.66 0.766661
Target:  5'- -aCucGCGCUCGGgcAGcGCCGCGaaGCg -3'
miRNA:   3'- aaGuuUGCGAGCC--UC-CGGCGCgaCGa -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 133733 0.66 0.766661
Target:  5'- -gCGAGCGCUggCGGAcuacgcgaccguGGuCCGCGCgUGCg -3'
miRNA:   3'- aaGUUUGCGA--GCCU------------CC-GGCGCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 86392 0.66 0.766661
Target:  5'- cUCAcGGCGUUgGGcacGGUCGCGUUGCg -3'
miRNA:   3'- aAGU-UUGCGAgCCu--CCGGCGCGACGa -5'
25035 5' -58.6 NC_005336.1 + 136232 0.66 0.766661
Target:  5'- -gCAGGCuGCUCGGcGcGCuCGCGCUGgUg -3'
miRNA:   3'- aaGUUUG-CGAGCCuC-CG-GCGCGACgA- -5'
25035 5' -58.6 NC_005336.1 + 6717 0.66 0.7571
Target:  5'- -gCAGGCGUUUGGGuucGcGCCGCGCUcgaGCa -3'
miRNA:   3'- aaGUUUGCGAGCCU---C-CGGCGCGA---CGa -5'
25035 5' -58.6 NC_005336.1 + 98038 0.66 0.7571
Target:  5'- --uGGACGCgcucgCGGuGGCCGCgGCcgUGCUc -3'
miRNA:   3'- aagUUUGCGa----GCCuCCGGCG-CG--ACGA- -5'
25035 5' -58.6 NC_005336.1 + 39034 0.66 0.7571
Target:  5'- cUCucGCGCaaguacgCGGAGGCgGaGCUGCa -3'
miRNA:   3'- aAGuuUGCGa------GCCUCCGgCgCGACGa -5'
25035 5' -58.6 NC_005336.1 + 95589 0.66 0.7571
Target:  5'- cUCGGGCGCggGGucucGCCGCGCggGCa -3'
miRNA:   3'- aAGUUUGCGagCCuc--CGGCGCGa-CGa -5'
25035 5' -58.6 NC_005336.1 + 98580 0.66 0.747428
Target:  5'- gUUCcuGCGCcagagcaacgCGGccacGGUCGCGCUGCUg -3'
miRNA:   3'- -AAGuuUGCGa---------GCCu---CCGGCGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 59676 0.66 0.747428
Target:  5'- aUCAAcgagacGCGCgccaCGGAGGgCgucuacggGCGCUGCUa -3'
miRNA:   3'- aAGUU------UGCGa---GCCUCCgG--------CGCGACGA- -5'
25035 5' -58.6 NC_005336.1 + 16381 0.66 0.747428
Target:  5'- aUCAcGAUGUgcgCGGAGacGCCGCGCcgGCUc -3'
miRNA:   3'- aAGU-UUGCGa--GCCUC--CGGCGCGa-CGA- -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 453 0.66 0.737654
Target:  5'- cUCGcgUGCcgCGGGcGGCCGCGCguccGCg -3'
miRNA:   3'- aAGUuuGCGa-GCCU-CCGGCGCGa---CGa -5'
25035 5' -58.6 NC_005336.1 + 75144 0.66 0.736671
Target:  5'- gUCGAgcgccgggaagcgGCGCUCGGGcgcGGCucCGCGCaGCUg -3'
miRNA:   3'- aAGUU-------------UGCGAGCCU---CCG--GCGCGaCGA- -5'
25035 5' -58.6 NC_005336.1 + 14090 0.66 0.727787
Target:  5'- cUCGcGCGCUCauGAGGCaCGUGCgGCa -3'
miRNA:   3'- aAGUuUGCGAGc-CUCCG-GCGCGaCGa -5'
25035 5' -58.6 NC_005336.1 + 133348 0.66 0.727787
Target:  5'- cUCGAucuCGC-CGGAGGCgGCgGCgGCg -3'
miRNA:   3'- aAGUUu--GCGaGCCUCCGgCG-CGaCGa -5'
25035 5' -58.6 NC_005336.1 + 48100 0.66 0.727787
Target:  5'- --uGGACGCgCGGucgcGGCUGCGCaUGCg -3'
miRNA:   3'- aagUUUGCGaGCCu---CCGGCGCG-ACGa -5'
25035 5' -58.6 NC_005336.1 + 38107 0.66 0.727787
Target:  5'- --gGAGCGCUCGcGcauGGCCGCGagcagcgcCUGCg -3'
miRNA:   3'- aagUUUGCGAGC-Cu--CCGGCGC--------GACGa -5'
25035 5' -58.6 NC_005336.1 + 130036 0.66 0.717836
Target:  5'- -aCAcuCGCUgGuGGGGCCGCuGCUGgCUg -3'
miRNA:   3'- aaGUuuGCGAgC-CUCCGGCG-CGAC-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.