miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25036 3' -62.3 NC_005336.1 + 111196 0.66 0.662993
Target:  5'- cGuuGGCUGCgUGGCcgagUACCuGCUCgCGGc -3'
miRNA:   3'- -CggCCGAUG-GCCGa---GUGGcCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 74345 0.66 0.662993
Target:  5'- aCCGGCgcauugACCGGC--ACCGGCgcgucUCCa- -3'
miRNA:   3'- cGGCCGa-----UGGCCGagUGGCCG-----AGGcc -5'
25036 3' -62.3 NC_005336.1 + 136231 0.66 0.662993
Target:  5'- cGCaGGCUGCuCGGCgcgcucgCGCUGGUggCGGc -3'
miRNA:   3'- -CGgCCGAUG-GCCGa------GUGGCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 69775 0.66 0.662993
Target:  5'- cGCCcGCUGCUGGaccugUGCCGGCgCuCGGa -3'
miRNA:   3'- -CGGcCGAUGGCCga---GUGGCCGaG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 50407 0.66 0.662993
Target:  5'- cGCCGGCUGCgCGGCgggcgacgUGCCGucccGCguaCGGc -3'
miRNA:   3'- -CGGCCGAUG-GCCGa-------GUGGC----CGag-GCC- -5'
25036 3' -62.3 NC_005336.1 + 136231 0.66 0.662993
Target:  5'- cGCaGGCUGCuCGGCgcgcucgCGCUGGUggCGGc -3'
miRNA:   3'- -CGgCCGAUG-GCCGa------GUGGCCGagGCC- -5'
25036 3' -62.3 NC_005336.1 + 11842 0.66 0.653271
Target:  5'- cGCCGGCcACCaGCgCGuCCGGCgCCa- -3'
miRNA:   3'- -CGGCCGaUGGcCGaGU-GGCCGaGGcc -5'
25036 3' -62.3 NC_005336.1 + 124744 0.66 0.653271
Target:  5'- uGCUGGCaUGCaGGCgcacuUCGCgCGGCgcCCGGg -3'
miRNA:   3'- -CGGCCG-AUGgCCG-----AGUG-GCCGa-GGCC- -5'
25036 3' -62.3 NC_005336.1 + 81127 0.66 0.653271
Target:  5'- cGCUGGCcaUGCCcucaGGCaUgACgCGGCUCaCGGa -3'
miRNA:   3'- -CGGCCG--AUGG----CCG-AgUG-GCCGAG-GCC- -5'
25036 3' -62.3 NC_005336.1 + 18689 0.66 0.653271
Target:  5'- cGCCGaGCUGUCGGggauCUCgcgguggcgguGCCGGCgCCGGu -3'
miRNA:   3'- -CGGC-CGAUGGCC----GAG-----------UGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 42299 0.66 0.653271
Target:  5'- cGCCGGCaagucgugCGGCUgCGCCucgaGGCUgCGGc -3'
miRNA:   3'- -CGGCCGaug-----GCCGA-GUGG----CCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 74033 0.66 0.653271
Target:  5'- aGCCGGgUcUCGGCUgugCugCGcgaggcgcGCUCCGGa -3'
miRNA:   3'- -CGGCCgAuGGCCGA---GugGC--------CGAGGCC- -5'
25036 3' -62.3 NC_005336.1 + 14913 0.66 0.653271
Target:  5'- aGuuGGCUGCCcGCgCGCCGcGCggCCGc -3'
miRNA:   3'- -CggCCGAUGGcCGaGUGGC-CGa-GGCc -5'
25036 3' -62.3 NC_005336.1 + 73927 0.66 0.652298
Target:  5'- aGCCGG-UACCGGCccugCACUucgcgcgcgagcgGGUaCCGGa -3'
miRNA:   3'- -CGGCCgAUGGCCGa---GUGG-------------CCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 38658 0.66 0.643534
Target:  5'- cGCUgGGCU-UCGGCUCGgccgaCGGCUCCc- -3'
miRNA:   3'- -CGG-CCGAuGGCCGAGUg----GCCGAGGcc -5'
25036 3' -62.3 NC_005336.1 + 131964 0.66 0.643534
Target:  5'- cGCCGGCgcauCCGcGCU-ACCGGaggCCGu -3'
miRNA:   3'- -CGGCCGau--GGC-CGAgUGGCCga-GGCc -5'
25036 3' -62.3 NC_005336.1 + 128566 0.66 0.643534
Target:  5'- uGCCGGUgaucaagcacGCCGGCgccguggagUACUGGCcUCGGa -3'
miRNA:   3'- -CGGCCGa---------UGGCCGa--------GUGGCCGaGGCC- -5'
25036 3' -62.3 NC_005336.1 + 73824 0.66 0.64256
Target:  5'- cGCCGGCca-CGGCcgcgacgcggucaUCGCCgcaGGCUCCu- -3'
miRNA:   3'- -CGGCCGaugGCCG-------------AGUGG---CCGAGGcc -5'
25036 3' -62.3 NC_005336.1 + 136602 0.66 0.633788
Target:  5'- gGCCGcGCgGCCGcGCUCGgagUGGCUgCGGc -3'
miRNA:   3'- -CGGC-CGaUGGC-CGAGUg--GCCGAgGCC- -5'
25036 3' -62.3 NC_005336.1 + 10704 0.66 0.633788
Target:  5'- cGUCGGCgg-CGGCUCGuCCcaGGCcugCCGGc -3'
miRNA:   3'- -CGGCCGaugGCCGAGU-GG--CCGa--GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.