miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25038 3' -62 NC_005336.1 + 44868 0.66 0.629656
Target:  5'- ----cGGUCCCgGCGGagGCCGUGa- -3'
miRNA:   3'- guguaCCGGGGgUGCCagCGGCGCau -5'
25038 3' -62 NC_005336.1 + 22308 0.66 0.629656
Target:  5'- -cCGUGGaCCCCgAC-GUCGCCGCc-- -3'
miRNA:   3'- guGUACC-GGGGgUGcCAGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 36290 0.66 0.629656
Target:  5'- cCGCGUGcGCgCCCgGCGG-CGgCGCGg- -3'
miRNA:   3'- -GUGUAC-CG-GGGgUGCCaGCgGCGCau -5'
25038 3' -62 NC_005336.1 + 50694 0.66 0.629656
Target:  5'- cCGCucGGCCUCCGCgcgcgcggcaaGGUCGCCGaCGa- -3'
miRNA:   3'- -GUGuaCCGGGGGUG-----------CCAGCGGC-GCau -5'
25038 3' -62 NC_005336.1 + 64688 0.66 0.629656
Target:  5'- gCugGUGGCgcgCCCgGCGGaCGCgCGCGg- -3'
miRNA:   3'- -GugUACCG---GGGgUGCCaGCG-GCGCau -5'
25038 3' -62 NC_005336.1 + 115736 0.66 0.619717
Target:  5'- -cCGUGGCgCaCCCGCGc-CGCUGCGUGu -3'
miRNA:   3'- guGUACCG-G-GGGUGCcaGCGGCGCAU- -5'
25038 3' -62 NC_005336.1 + 119719 0.66 0.616737
Target:  5'- ----aGGCCggcgagccgccgagCCCGCGGUCGCCcuGCGa- -3'
miRNA:   3'- guguaCCGG--------------GGGUGCCAGCGG--CGCau -5'
25038 3' -62 NC_005336.1 + 1022 0.66 0.609787
Target:  5'- cCGCuccGCuCCCCGCGGUCGCgGgCGg- -3'
miRNA:   3'- -GUGuacCG-GGGGUGCCAGCGgC-GCau -5'
25038 3' -62 NC_005336.1 + 1022 0.66 0.609787
Target:  5'- cCGCuccGCuCCCCGCGGUCGCgGgCGg- -3'
miRNA:   3'- -GUGuacCG-GGGGUGCCAGCGgC-GCau -5'
25038 3' -62 NC_005336.1 + 75773 0.66 0.609787
Target:  5'- aGCGUGaGCaugCCCACGGU-GCCGCu-- -3'
miRNA:   3'- gUGUAC-CGg--GGGUGCCAgCGGCGcau -5'
25038 3' -62 NC_005336.1 + 44907 0.66 0.599873
Target:  5'- aCGCAUaGCgCCUUACGG-CGCgCGCGUGg -3'
miRNA:   3'- -GUGUAcCG-GGGGUGCCaGCG-GCGCAU- -5'
25038 3' -62 NC_005336.1 + 114364 0.66 0.589982
Target:  5'- gACGaGGCCUUCGcCGGccgCGCCGCGg- -3'
miRNA:   3'- gUGUaCCGGGGGU-GCCa--GCGGCGCau -5'
25038 3' -62 NC_005336.1 + 5431 0.66 0.580119
Target:  5'- gCACGUGGCgCgucagCGCGGUCGCCacGCGc- -3'
miRNA:   3'- -GUGUACCGgGg----GUGCCAGCGG--CGCau -5'
25038 3' -62 NC_005336.1 + 15728 0.66 0.580119
Target:  5'- aCGCGgcgacGGCgUCCGCGGgagGCCGCGUc -3'
miRNA:   3'- -GUGUa----CCGgGGGUGCCag-CGGCGCAu -5'
25038 3' -62 NC_005336.1 + 127515 0.67 0.574219
Target:  5'- gACGUGGaCCCCGCuGugcugaagacgcucaUCGCCGCGg- -3'
miRNA:   3'- gUGUACCgGGGGUGcC---------------AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 22675 0.67 0.574219
Target:  5'- gCGCGcGGUcgugagcaacuucaaCCCCGCGGUgGUCGCGg- -3'
miRNA:   3'- -GUGUaCCG---------------GGGGUGCCAgCGGCGCau -5'
25038 3' -62 NC_005336.1 + 64061 0.67 0.570292
Target:  5'- cCGCAUGaCCUCCGCGGacgucUCGCUGCu-- -3'
miRNA:   3'- -GUGUACcGGGGGUGCC-----AGCGGCGcau -5'
25038 3' -62 NC_005336.1 + 87881 0.67 0.567352
Target:  5'- --aGUGGUgCCCCGCGGcggcgagcuucuccUUGCCGCGg- -3'
miRNA:   3'- gugUACCG-GGGGUGCC--------------AGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 84693 0.67 0.564415
Target:  5'- gCugGUGGCCUCggaggucccggacgaCGCGGcUGCCGCGg- -3'
miRNA:   3'- -GugUACCGGGG---------------GUGCCaGCGGCGCau -5'
25038 3' -62 NC_005336.1 + 94174 0.67 0.560506
Target:  5'- gCGCcUGuucccGCCCCCGCGGcCGCCgacuucggcaGCGUGg -3'
miRNA:   3'- -GUGuAC-----CGGGGGUGCCaGCGG----------CGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.