miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 112648 0.66 0.645345
Target:  5'- uCCCGCGCUucaaCGUGACGCGcuCGGggCu -3'
miRNA:   3'- cGGGCGCGG----GCGCUGCGUc-GCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 73128 0.66 0.625867
Target:  5'- cGCCCaGCgGCCCGCG-CGUGcGuCGGUUgGu -3'
miRNA:   3'- -CGGG-CG-CGGGCGCuGCGU-C-GCCAAgC- -5'
25042 5' -62.7 NC_005336.1 + 80836 0.66 0.616131
Target:  5'- cGCCCGCGCUCuuGAUGC-GCGcGUa-- -3'
miRNA:   3'- -CGGGCGCGGGcgCUGCGuCGC-CAagc -5'
25042 5' -62.7 NC_005336.1 + 129284 1.09 0.000752
Target:  5'- cGCCCGCGCCCGCGACGCAGCGGUUCGc -3'
miRNA:   3'- -CGGGCGCGGGCGCUGCGUCGCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 89876 0.66 0.635607
Target:  5'- cGCCCcuGCGCCaucaGCGACGCcaCGGccuUUCa -3'
miRNA:   3'- -CGGG--CGCGGg---CGCUGCGucGCC---AAGc -5'
25042 5' -62.7 NC_005336.1 + 71501 0.66 0.635607
Target:  5'- cGCgCGCGCCagcaCGCacgccCGCAGCGGcUCa -3'
miRNA:   3'- -CGgGCGCGG----GCGcu---GCGUCGCCaAGc -5'
25042 5' -62.7 NC_005336.1 + 41918 0.66 0.635607
Target:  5'- cGCCgagGCGCUCGCGgaGCGCGGCGug-Ca -3'
miRNA:   3'- -CGGg--CGCGGGCGC--UGCGUCGCcaaGc -5'
25042 5' -62.7 NC_005336.1 + 18992 0.66 0.635607
Target:  5'- gGUCUGUGCgCGUGACGagccggaAGCcggGGUUCGa -3'
miRNA:   3'- -CGGGCGCGgGCGCUGCg------UCG---CCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 123032 0.66 0.625867
Target:  5'- -aCCGCGUCCGCGAccuCGCgAGCaacUUCGa -3'
miRNA:   3'- cgGGCGCGGGCGCU---GCG-UCGcc-AAGC- -5'
25042 5' -62.7 NC_005336.1 + 75630 0.66 0.625867
Target:  5'- cGCCUGgGUCCcagagcCGACGCAGCGccgCGa -3'
miRNA:   3'- -CGGGCgCGGGc-----GCUGCGUCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 113457 0.66 0.625867
Target:  5'- cGCgCGCGCCCgGCGAcCGCGucacGCuGGccUUCGg -3'
miRNA:   3'- -CGgGCGCGGG-CGCU-GCGU----CG-CC--AAGC- -5'
25042 5' -62.7 NC_005336.1 + 24032 0.66 0.629763
Target:  5'- cGUUCGCGCaCCGgaCGuccauggccccguacACGCAGCGGcgCGg -3'
miRNA:   3'- -CGGGCGCG-GGC--GC---------------UGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 110374 0.66 0.645345
Target:  5'- cGUCCauGCGCCUGC-ACGCGcGCGGcagcuUUCGc -3'
miRNA:   3'- -CGGG--CGCGGGCGcUGCGU-CGCC-----AAGC- -5'
25042 5' -62.7 NC_005336.1 + 68841 0.66 0.625867
Target:  5'- -aCCGCGCgCCGCaggugcauGugGCcacgaAGgGGUUCGg -3'
miRNA:   3'- cgGGCGCG-GGCG--------CugCG-----UCgCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 29973 0.66 0.645345
Target:  5'- --aCGCGCUCGCGGCGCuGC---UCGa -3'
miRNA:   3'- cggGCGCGGGCGCUGCGuCGccaAGC- -5'
25042 5' -62.7 NC_005336.1 + 469 0.66 0.635607
Target:  5'- gGCCgCGCGUCCGCGACGgccccgcuaaAGC-GUUUa -3'
miRNA:   3'- -CGG-GCGCGGGCGCUGCg---------UCGcCAAGc -5'
25042 5' -62.7 NC_005336.1 + 40437 0.66 0.625867
Target:  5'- cGCagCGUGCgCGCGACGCgcacgccggaGGCGGcgCa -3'
miRNA:   3'- -CGg-GCGCGgGCGCUGCG----------UCGCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 63484 0.66 0.625867
Target:  5'- cGCCaGCgGCCCGCG-CGCA-CGGUg-- -3'
miRNA:   3'- -CGGgCG-CGGGCGCuGCGUcGCCAagc -5'
25042 5' -62.7 NC_005336.1 + 109139 0.66 0.635607
Target:  5'- aCCUGCGCacggCUGCGAgGCAGCuG-UCGg -3'
miRNA:   3'- cGGGCGCG----GGCGCUgCGUCGcCaAGC- -5'
25042 5' -62.7 NC_005336.1 + 131358 0.66 0.635607
Target:  5'- -aCCggGCGCCCGCacgaaucuGcCGCAGCGaGUUCu -3'
miRNA:   3'- cgGG--CGCGGGCG--------CuGCGUCGC-CAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.