miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 39004 0.66 0.522967
Target:  5'- aGCGCGuCCGCgagccccgGCGGcgCGaCCUCCUCg -3'
miRNA:   3'- -CGCGC-GGCGg-------CGCCa-GCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 87855 0.66 0.522967
Target:  5'- cGCGCGuCCGuCCGCGauggaGUCGUaguggugCCCCg -3'
miRNA:   3'- -CGCGC-GGC-GGCGC-----CAGCAgga----GGGGa -5'
25043 5' -65.2 NC_005336.1 + 13641 0.66 0.522967
Target:  5'- cUGgGCCGCUGCGccgaggacGUCGcgcucuUCCUCCUCUu -3'
miRNA:   3'- cGCgCGGCGGCGC--------CAGC------AGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 35709 0.66 0.522967
Target:  5'- cCGUGCCGCUGCGGcUCGcgcagcggaugUCCacgCCCg- -3'
miRNA:   3'- cGCGCGGCGGCGCC-AGC-----------AGGa--GGGga -5'
25043 5' -65.2 NC_005336.1 + 43817 0.66 0.522967
Target:  5'- gGCGaGCCGCgCGCGGcUCGUgCgaggCCCg- -3'
miRNA:   3'- -CGCgCGGCG-GCGCC-AGCAgGa---GGGga -5'
25043 5' -65.2 NC_005336.1 + 73370 0.66 0.513786
Target:  5'- cGCGCucgugGCCGCCGUcgaGGcCGUCCUCg--- -3'
miRNA:   3'- -CGCG-----CGGCGGCG---CCaGCAGGAGggga -5'
25043 5' -65.2 NC_005336.1 + 133836 0.66 0.513786
Target:  5'- cGCGCGgcuggugCGCCGCGacgUGUUCUCCCgCUg -3'
miRNA:   3'- -CGCGCg------GCGGCGCca-GCAGGAGGG-GA- -5'
25043 5' -65.2 NC_005336.1 + 3932 0.66 0.513786
Target:  5'- aGCGgGCCGCCGCGG-CG-CagcgCCgCg -3'
miRNA:   3'- -CGCgCGGCGGCGCCaGCaGga--GGgGa -5'
25043 5' -65.2 NC_005336.1 + 121829 0.66 0.513786
Target:  5'- uCGCGCUGggcugcgagaCCGCGGUCGggcCCUgCUCg -3'
miRNA:   3'- cGCGCGGC----------GGCGCCAGCa--GGAgGGGa -5'
25043 5' -65.2 NC_005336.1 + 73793 0.66 0.513786
Target:  5'- cGCGCGCacaCGCCGCGcagCG-CCUCCa-- -3'
miRNA:   3'- -CGCGCG---GCGGCGCca-GCaGGAGGgga -5'
25043 5' -65.2 NC_005336.1 + 138897 0.66 0.504672
Target:  5'- -aGCGCgGaggGCgGGUCG-CCUCCCCg -3'
miRNA:   3'- cgCGCGgCgg-CG-CCAGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 138897 0.66 0.504672
Target:  5'- -aGCGCgGaggGCgGGUCG-CCUCCCCg -3'
miRNA:   3'- cgCGCGgCgg-CG-CCAGCaGGAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 78528 0.66 0.504672
Target:  5'- cGCGCaCCGCCaGC--UUGUCCUugCCCCUg -3'
miRNA:   3'- -CGCGcGGCGG-CGccAGCAGGA--GGGGA- -5'
25043 5' -65.2 NC_005336.1 + 65236 0.66 0.504672
Target:  5'- cGCGUGCCcauGUCGCGcGUCGUCggCCUg- -3'
miRNA:   3'- -CGCGCGG---CGGCGC-CAGCAGgaGGGga -5'
25043 5' -65.2 NC_005336.1 + 6103 0.66 0.504672
Target:  5'- cGCGCGCCcucGCCGCGcagCG-CCagCUCCUg -3'
miRNA:   3'- -CGCGCGG---CGGCGCca-GCaGGa-GGGGA- -5'
25043 5' -65.2 NC_005336.1 + 15012 0.66 0.504672
Target:  5'- uCGCGCgGCgCGCGGgcggCGUCggcgcgcgCCCCg -3'
miRNA:   3'- cGCGCGgCG-GCGCCa---GCAGga------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 10434 0.66 0.504672
Target:  5'- cGCGCGCUGCCGCaGGaUGUCCa----- -3'
miRNA:   3'- -CGCGCGGCGGCG-CCaGCAGGagggga -5'
25043 5' -65.2 NC_005336.1 + 70677 0.66 0.495627
Target:  5'- gGCGCGCgCGCaCGUucuGGaaGUCCgugcgCCCCa -3'
miRNA:   3'- -CGCGCG-GCG-GCG---CCagCAGGa----GGGGa -5'
25043 5' -65.2 NC_005336.1 + 17262 0.66 0.495627
Target:  5'- aGCGCG-CGCgCGCGGgucgCGUCCacgCgCCg -3'
miRNA:   3'- -CGCGCgGCG-GCGCCa---GCAGGa--GgGGa -5'
25043 5' -65.2 NC_005336.1 + 101432 0.66 0.495627
Target:  5'- cGCG-GCCGCgcgCGUGGUCG-CgCUCCCg- -3'
miRNA:   3'- -CGCgCGGCG---GCGCCAGCaG-GAGGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.