miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 139110 0.69 0.966875
Target:  5'- ---aGGAGCGCGGAGGG-CgGGucaGCu -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUug-CG- -5'
25044 5' -49.5 NC_005336.1 + 139110 0.69 0.966875
Target:  5'- ---aGGAGCGCGGAGGG-CgGGucaGCu -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUug-CG- -5'
25044 5' -49.5 NC_005336.1 + 138894 0.73 0.857607
Target:  5'- ---aGGAGCGCGGAGGG-CgGGuCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 138894 0.73 0.857607
Target:  5'- ---aGGAGCGCGGAGGG-CgGGuCGCc -3'
miRNA:   3'- uuaaUUUCGCGCCUUCCaGgCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 136386 0.67 0.993978
Target:  5'- ------cGCGCGGcacauggcggcGGUCgCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCuu---------CCAG-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 136386 0.67 0.993978
Target:  5'- ------cGCGCGGcacauggcggcGGUCgCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCuu---------CCAG-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 135809 0.77 0.682807
Target:  5'- ------cGCGCGGGcggcGGGcCCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCU----UCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 132988 0.66 0.995721
Target:  5'- ----cGAGCGCGaGuucguGGUCUGcGCGCu -3'
miRNA:   3'- uuaauUUCGCGC-Cuu---CCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 132146 0.83 0.395971
Target:  5'- -----uAGUGCGGGAGGUCCGuguguACGCa -3'
miRNA:   3'- uuaauuUCGCGCCUUCCAGGCu----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 129924 0.66 0.996363
Target:  5'- --aUGGAGCucgcCGGcAAGGgCUGGACGCg -3'
miRNA:   3'- uuaAUUUCGc---GCC-UUCCaGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 128977 1.09 0.010053
Target:  5'- aAAUUAAAGCGCGGAAGGUCCGAACGCc -3'
miRNA:   3'- -UUAAUUUCGCGCCUUCCAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 128070 0.66 0.996363
Target:  5'- ----uGAGUGCGGAGaGcgCgCGAGCGCa -3'
miRNA:   3'- uuaauUUCGCGCCUUcCa-G-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 127304 0.67 0.989663
Target:  5'- -----cGGCGCGGAGGcGgCCGugauCGCa -3'
miRNA:   3'- uuaauuUCGCGCCUUC-CaGGCuu--GCG- -5'
25044 5' -49.5 NC_005336.1 + 127017 0.67 0.989663
Target:  5'- ---gAGGGCGCGGAcgugaacuacgcGGGcCCGcgcggguACGCg -3'
miRNA:   3'- uuaaUUUCGCGCCU------------UCCaGGCu------UGCG- -5'
25044 5' -49.5 NC_005336.1 + 126969 0.73 0.849335
Target:  5'- ---gAGAGCGaGGAGcGUCCGGACGUg -3'
miRNA:   3'- uuaaUUUCGCgCCUUcCAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 126402 0.69 0.977607
Target:  5'- ---cGAAGCccuucgcguuuccgGCGaGGAGGUCCGGuCGCc -3'
miRNA:   3'- uuaaUUUCG--------------CGC-CUUCCAGGCUuGCG- -5'
25044 5' -49.5 NC_005336.1 + 125921 0.66 0.996363
Target:  5'- --cUAcGGCGCGGu-GGUCgCG-GCGCc -3'
miRNA:   3'- uuaAUuUCGCGCCuuCCAG-GCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 125249 0.66 0.996363
Target:  5'- --aUGGuGCGCGuGAucGUgCCGGGCGCg -3'
miRNA:   3'- uuaAUUuCGCGC-CUucCA-GGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 123968 0.66 0.996363
Target:  5'- ----cGGGCGCGGAcGuGaCCGcGCGCa -3'
miRNA:   3'- uuaauUUCGCGCCUuC-CaGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 123791 0.77 0.668852
Target:  5'- ----uGAGCGgGGAGGGUCCaucuugagcacgcaGGACGCg -3'
miRNA:   3'- uuaauUUCGCgCCUUCCAGG--------------CUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.