miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 3' -55 NC_005337.1 + 87811 0.65 0.927546
Target:  5'- gCCCgGGagcucGCGGCG-CGcCGCGCGCAGa -3'
miRNA:   3'- gGGGaCC-----UGUUGUaGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 52536 0.65 0.927546
Target:  5'- aUgCUGGACGggaGCGUCaUCGUGUACAu -3'
miRNA:   3'- gGgGACCUGU---UGUAGcAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 39435 0.65 0.927546
Target:  5'- gCCCgCUcGGGCcGCGcUCGgUGCGCACGAu -3'
miRNA:   3'- -GGG-GA-CCUGuUGU-AGCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 30752 0.65 0.927546
Target:  5'- gCUCCUcGGGCGGCAgcgugCGgaagCGCuGCACGGa -3'
miRNA:   3'- -GGGGA-CCUGUUGUa----GCa---GCG-CGUGUU- -5'
25504 3' -55 NC_005337.1 + 119847 0.65 0.927546
Target:  5'- aCCCggcgccaGcGGCGGCA-CGUCGCGCgGCAAg -3'
miRNA:   3'- gGGGa------C-CUGUUGUaGCAGCGCG-UGUU- -5'
25504 3' -55 NC_005337.1 + 111275 0.66 0.922041
Target:  5'- cCUCCUGGACGACAUCcau-CGUAUAu -3'
miRNA:   3'- -GGGGACCUGUUGUAGcagcGCGUGUu -5'
25504 3' -55 NC_005337.1 + 99609 0.66 0.922041
Target:  5'- gCCgUGaGCAACGgcuaCGUCGUGCGCGu -3'
miRNA:   3'- gGGgACcUGUUGUa---GCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 120215 0.66 0.922041
Target:  5'- aCCUCgccgaggcGGACAGCAUCGccgagcagugCGUGUACGAa -3'
miRNA:   3'- -GGGGa-------CCUGUUGUAGCa---------GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 131545 0.66 0.922041
Target:  5'- gCCCgcuaccGGCgGACGUCGUCGCGCuCGu -3'
miRNA:   3'- gGGGac----CUG-UUGUAGCAGCGCGuGUu -5'
25504 3' -55 NC_005337.1 + 47856 0.66 0.916289
Target:  5'- aCCgaGGACGccauccACAUCGcgccggaCGCGCGCAGc -3'
miRNA:   3'- gGGgaCCUGU------UGUAGCa------GCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 7464 0.66 0.916289
Target:  5'- gUCCgUGG-CGACGagGgCGCGCACGAc -3'
miRNA:   3'- -GGGgACCuGUUGUagCaGCGCGUGUU- -5'
25504 3' -55 NC_005337.1 + 46320 0.66 0.916289
Target:  5'- cCUCCaGGAgGACAUCaUCGUGUACu- -3'
miRNA:   3'- -GGGGaCCUgUUGUAGcAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 58791 0.66 0.913919
Target:  5'- aUCCUGGACAugaccuggaacgagGCcucgcugcgccagAUCGUCGgGCGCGc -3'
miRNA:   3'- gGGGACCUGU--------------UG-------------UAGCAGCgCGUGUu -5'
25504 3' -55 NC_005337.1 + 120565 0.66 0.910291
Target:  5'- -aCCUGGACGugAUCugcuccacCGCGCACc- -3'
miRNA:   3'- ggGGACCUGUugUAGca------GCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 117281 0.66 0.910291
Target:  5'- gCCCCgcccgauaUGuuCGACGUgGUCGCGUACGc -3'
miRNA:   3'- -GGGG--------ACcuGUUGUAgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 62419 0.66 0.910291
Target:  5'- gCCCgUGG----CGUCGUCGUGCACc- -3'
miRNA:   3'- -GGGgACCuguuGUAGCAGCGCGUGuu -5'
25504 3' -55 NC_005337.1 + 25681 0.66 0.910291
Target:  5'- gCCCUcGAaGGCggCGUCGCGCAgGAg -3'
miRNA:   3'- gGGGAcCUgUUGuaGCAGCGCGUgUU- -5'
25504 3' -55 NC_005337.1 + 59650 0.66 0.910291
Target:  5'- gCCCCgccggGGaACAucACGUCGUCGCGg---- -3'
miRNA:   3'- -GGGGa----CC-UGU--UGUAGCAGCGCguguu -5'
25504 3' -55 NC_005337.1 + 131227 0.66 0.910291
Target:  5'- gCCgCCggugUGuGGCGuACGUgGUCGCGCACAu -3'
miRNA:   3'- -GG-GG----AC-CUGU-UGUAgCAGCGCGUGUu -5'
25504 3' -55 NC_005337.1 + 132528 0.66 0.910291
Target:  5'- gCCCUucguccgggcGGGCcugGACAUCGaCGCGCugAAc -3'
miRNA:   3'- gGGGA----------CCUG---UUGUAGCaGCGCGugUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.