miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25504 5' -57.9 NC_005337.1 + 116002 0.66 0.807267
Target:  5'- gCGCUggGCGUGCGGcucaccGAgCAGGUGGa -3'
miRNA:   3'- -GCGGuaCGCGCGCCa-----CUaGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 115338 0.66 0.807267
Target:  5'- aCGCCcgGCG-GCGGgcgGAUCugcgugcccGCGGa -3'
miRNA:   3'- -GCGGuaCGCgCGCCa--CUAGuu-------CGCCa -5'
25504 5' -57.9 NC_005337.1 + 110368 0.7 0.580669
Target:  5'- gCGCgCggGCGCGCGGcagcGA-CAGGCGGa -3'
miRNA:   3'- -GCG-GuaCGCGCGCCa---CUaGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 109496 0.72 0.472846
Target:  5'- aGCCAcGCGUacGUGGUGAUCAGGaaGGUg -3'
miRNA:   3'- gCGGUaCGCG--CGCCACUAGUUCg-CCA- -5'
25504 5' -57.9 NC_005337.1 + 109017 0.66 0.789332
Target:  5'- uCGCggaaCGUGgGCGUGGaGAUCcuGCGGUc -3'
miRNA:   3'- -GCG----GUACgCGCGCCaCUAGuuCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 108994 0.67 0.732426
Target:  5'- cCGCCGUGCGCGCGaacucCAgcgccgcguuGGCGGa -3'
miRNA:   3'- -GCGGUACGCGCGCcacuaGU----------UCGCCa -5'
25504 5' -57.9 NC_005337.1 + 108838 0.65 0.82287
Target:  5'- uGCCGaaGCGCGCGGgcGAcacgccgucgugCGAGCGGa -3'
miRNA:   3'- gCGGUa-CGCGCGCCa-CUa-----------GUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 107153 0.67 0.751839
Target:  5'- aCGCUGcUGCGCGUGGc---CAAGCGGc -3'
miRNA:   3'- -GCGGU-ACGCGCGCCacuaGUUCGCCa -5'
25504 5' -57.9 NC_005337.1 + 106022 0.68 0.702679
Target:  5'- aCGCaCGUGCGCGUGGUGccgcgCGA-CGGc -3'
miRNA:   3'- -GCG-GUACGCGCGCCACua---GUUcGCCa -5'
25504 5' -57.9 NC_005337.1 + 104974 0.67 0.770832
Target:  5'- -cCCAgaugaacGCGCGCGG-GAUCAAGaucaaGGUg -3'
miRNA:   3'- gcGGUa------CGCGCGCCaCUAGUUCg----CCA- -5'
25504 5' -57.9 NC_005337.1 + 100685 0.7 0.59081
Target:  5'- gCGCCGcGCGCGCGGccGAcgCGAcGCGGc -3'
miRNA:   3'- -GCGGUaCGCGCGCCa-CUa-GUU-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 100540 0.68 0.702679
Target:  5'- gCGCCAUGCGCcgGCGGU--UCAuGCGc- -3'
miRNA:   3'- -GCGGUACGCG--CGCCAcuAGUuCGCca -5'
25504 5' -57.9 NC_005337.1 + 100221 0.7 0.570564
Target:  5'- gGCCGgcgccGCGUGCGcGUGAUC--GCGGUc -3'
miRNA:   3'- gCGGUa----CGCGCGC-CACUAGuuCGCCA- -5'
25504 5' -57.9 NC_005337.1 + 100051 0.67 0.770832
Target:  5'- gGaCCGUGCGCGUGGUcGAcguggcCAAGCuGGa -3'
miRNA:   3'- gC-GGUACGCGCGCCA-CUa-----GUUCG-CCa -5'
25504 5' -57.9 NC_005337.1 + 99703 0.67 0.761393
Target:  5'- aCGCgcUGCGCGCGGccAUCGucGCGGa -3'
miRNA:   3'- -GCGguACGCGCGCCacUAGUu-CGCCa -5'
25504 5' -57.9 NC_005337.1 + 99202 0.66 0.776437
Target:  5'- gCGCCGgagacgcguucucGCGCGCGGacuUCGAcGCGGUc -3'
miRNA:   3'- -GCGGUa------------CGCGCGCCacuAGUU-CGCCA- -5'
25504 5' -57.9 NC_005337.1 + 98881 0.66 0.789332
Target:  5'- gCGCCGcGCGCGCGGacUGcgcgcUCGAGCccGGg -3'
miRNA:   3'- -GCGGUaCGCGCGCC--ACu----AGUUCG--CCa -5'
25504 5' -57.9 NC_005337.1 + 98850 0.67 0.722584
Target:  5'- gCGCCGUGCGCGUcc--AUCGAGCaGUa -3'
miRNA:   3'- -GCGGUACGCGCGccacUAGUUCGcCA- -5'
25504 5' -57.9 NC_005337.1 + 97059 0.72 0.436128
Target:  5'- uCGCCAcgcacgcgcgGCGCGCGGUGGUCu-GCGu- -3'
miRNA:   3'- -GCGGUa---------CGCGCGCCACUAGuuCGCca -5'
25504 5' -57.9 NC_005337.1 + 90698 0.75 0.312404
Target:  5'- gGCCAUcagcaccuccuucaGCGCGCGGUcggGGUCGcAGCGGUc -3'
miRNA:   3'- gCGGUA--------------CGCGCGCCA---CUAGU-UCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.