miRNA display CGI


Results 21 - 40 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25505 5' -56 NC_005337.1 + 131159 0.78 0.231855
Target:  5'- uGCUGC-ACACGCUgCUGCugCugauGCGCg -3'
miRNA:   3'- -CGACGuUGUGCGAgGACGugGu---CGUG- -5'
25505 5' -56 NC_005337.1 + 130936 0.68 0.757664
Target:  5'- cGCUGaucCAGC-CGUUCCUGgaCGCCGGCGu -3'
miRNA:   3'- -CGAC---GUUGuGCGAGGAC--GUGGUCGUg -5'
25505 5' -56 NC_005337.1 + 130884 0.74 0.407111
Target:  5'- aGCgGCAACACGC-CgCUGCACCucauggccGCGCa -3'
miRNA:   3'- -CGaCGUUGUGCGaG-GACGUGGu-------CGUG- -5'
25505 5' -56 NC_005337.1 + 130779 0.77 0.275314
Target:  5'- cGCcaCAACAacCUCCUGCACCAGCACg -3'
miRNA:   3'- -CGacGUUGUgcGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 130247 0.71 0.582364
Target:  5'- cGCUGCA-CGCGUaCCUGCacACCGGUg- -3'
miRNA:   3'- -CGACGUuGUGCGaGGACG--UGGUCGug -5'
25505 5' -56 NC_005337.1 + 129788 0.66 0.871662
Target:  5'- cGCUGCAcguGCugGCgaugCagaGCACCugccGCGCg -3'
miRNA:   3'- -CGACGU---UGugCGa---Gga-CGUGGu---CGUG- -5'
25505 5' -56 NC_005337.1 + 129669 0.99 0.009355
Target:  5'- uCUGCAggaACACGCUCCUGCACCAGCACg -3'
miRNA:   3'- cGACGU---UGUGCGAGGACGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 129512 0.69 0.676466
Target:  5'- cGCgucauCGACGCGCUgCUcGCGCgCGGCGCg -3'
miRNA:   3'- -CGac---GUUGUGCGAgGA-CGUG-GUCGUG- -5'
25505 5' -56 NC_005337.1 + 129227 0.66 0.839888
Target:  5'- uGCUGUGGCGCGacccCgCUGCAUCuGUACg -3'
miRNA:   3'- -CGACGUUGUGCga--G-GACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 128380 0.68 0.757664
Target:  5'- cCUGCGACGCGCUCCgcgugGUccGCCuGUc- -3'
miRNA:   3'- cGACGUUGUGCGAGGa----CG--UGGuCGug -5'
25505 5' -56 NC_005337.1 + 128289 0.76 0.308002
Target:  5'- uCUGCAACGCGCgcgCCUgGCGCCgucugcucgcgcgcGGCGCg -3'
miRNA:   3'- cGACGUUGUGCGa--GGA-CGUGG--------------UCGUG- -5'
25505 5' -56 NC_005337.1 + 128100 0.67 0.790211
Target:  5'- --gGCAACGCGCUCUucggcaaggucugcaUgauGCGCCuGCGCa -3'
miRNA:   3'- cgaCGUUGUGCGAGG---------------A---CGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 128051 0.78 0.262268
Target:  5'- cGCgGgGACACGCUgCUGCACCAcCACa -3'
miRNA:   3'- -CGaCgUUGUGCGAgGACGUGGUcGUG- -5'
25505 5' -56 NC_005337.1 + 128001 0.83 0.127985
Target:  5'- uGCUGCGGC-UGCUCCUGgaCGCCGGCGCc -3'
miRNA:   3'- -CGACGUUGuGCGAGGAC--GUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 127989 0.66 0.8562
Target:  5'- cGCUGCAACgccgacacgACGCUgCUGgACguGCu- -3'
miRNA:   3'- -CGACGUUG---------UGCGAgGACgUGguCGug -5'
25505 5' -56 NC_005337.1 + 127628 0.66 0.860931
Target:  5'- cGUUGUAcCGCGCggcggucuucaacCCUGCggcguGCCGGCGCc -3'
miRNA:   3'- -CGACGUuGUGCGa------------GGACG-----UGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 127500 0.66 0.839888
Target:  5'- --cGCGgggaguucgaccGCACGCcCUUGCACCuGUACa -3'
miRNA:   3'- cgaCGU------------UGUGCGaGGACGUGGuCGUG- -5'
25505 5' -56 NC_005337.1 + 127409 0.67 0.795786
Target:  5'- --gGC-GCACGCUgCUGCACCaccuGGCGa -3'
miRNA:   3'- cgaCGuUGUGCGAgGACGUGG----UCGUg -5'
25505 5' -56 NC_005337.1 + 127352 0.67 0.804953
Target:  5'- aGCUggugGCGAUgAUGCUgC-GCGCCGGCGCg -3'
miRNA:   3'- -CGA----CGUUG-UGCGAgGaCGUGGUCGUG- -5'
25505 5' -56 NC_005337.1 + 126970 0.69 0.717679
Target:  5'- uGCgGguACACGC-CaCUGCAcugcuacguCCAGCACg -3'
miRNA:   3'- -CGaCguUGUGCGaG-GACGU---------GGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.