miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25506 3' -64 NC_005337.1 + 17025 0.66 0.545545
Target:  5'- uGCgGGCCGCGCga---AGGCGCaCGGc -3'
miRNA:   3'- gCGgCCGGUGCGaacccUCCGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 28907 0.66 0.545545
Target:  5'- uGCUGGCCucCGCUacgaagucGGAGGCcuucacGCCGAc -3'
miRNA:   3'- gCGGCCGGu-GCGAac------CCUCCG------CGGCU- -5'
25506 3' -64 NC_005337.1 + 100240 0.66 0.545545
Target:  5'- uCGaCGGCaa-GCUcgUGGaGGGCGCCGAg -3'
miRNA:   3'- -GCgGCCGgugCGA--ACCcUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 47766 0.66 0.536051
Target:  5'- cCGCCGcGCCaACGCguacuucgagGGcGGGGUGCUGc -3'
miRNA:   3'- -GCGGC-CGG-UGCGaa--------CC-CUCCGCGGCu -5'
25506 3' -64 NC_005337.1 + 128689 0.66 0.535105
Target:  5'- cCGCCGGgCACGCgcgcUGGcGAcgcggcuGGCGCgCGu -3'
miRNA:   3'- -GCGGCCgGUGCGa---ACC-CU-------CCGCG-GCu -5'
25506 3' -64 NC_005337.1 + 61680 0.66 0.526615
Target:  5'- aCGCCcGCgCGCGacccGGAGGCGUCGGu -3'
miRNA:   3'- -GCGGcCG-GUGCgaacCCUCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 2657 0.66 0.526615
Target:  5'- gCGCCGGCCgccuccACGCU---GAGuGCGCgCGAg -3'
miRNA:   3'- -GCGGCCGG------UGCGAaccCUC-CGCG-GCU- -5'
25506 3' -64 NC_005337.1 + 127894 0.66 0.526615
Target:  5'- gCGCCGGCgaGCGCgugcGGGccgagccGGUGCUGGg -3'
miRNA:   3'- -GCGGCCGg-UGCGaa--CCCu------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 81816 0.66 0.526615
Target:  5'- aGCUGGCCcuGCGCc-GGGAGcuCGCUGGc -3'
miRNA:   3'- gCGGCCGG--UGCGaaCCCUCc-GCGGCU- -5'
25506 3' -64 NC_005337.1 + 69941 0.66 0.517242
Target:  5'- cCGCCGcggcGCCACGCUccgcgUGGuGGGCacgcgcaagacGCCGGa -3'
miRNA:   3'- -GCGGC----CGGUGCGA-----ACCcUCCG-----------CGGCU- -5'
25506 3' -64 NC_005337.1 + 41411 0.66 0.517242
Target:  5'- aCGuCCGGCgucCGC--GGGAGcGUGCCGAa -3'
miRNA:   3'- -GC-GGCCGgu-GCGaaCCCUC-CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 45064 0.66 0.517242
Target:  5'- gCGCCGGCCG-GCc--GGAGauccGUGCCGAc -3'
miRNA:   3'- -GCGGCCGGUgCGaacCCUC----CGCGGCU- -5'
25506 3' -64 NC_005337.1 + 40547 0.66 0.517242
Target:  5'- gCGCCGGCgGguCGCU--GGAGGCcgcGUCGAg -3'
miRNA:   3'- -GCGGCCGgU--GCGAacCCUCCG---CGGCU- -5'
25506 3' -64 NC_005337.1 + 75632 0.66 0.517242
Target:  5'- gCGCgGGCCGuCGUgaUGGGcgcguccGGCGUCGAc -3'
miRNA:   3'- -GCGgCCGGU-GCGa-ACCCu------CCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 82194 0.66 0.517242
Target:  5'- cCGCCGGgCGCGCacGGccGGCgGUCGAa -3'
miRNA:   3'- -GCGGCCgGUGCGaaCCcuCCG-CGGCU- -5'
25506 3' -64 NC_005337.1 + 39274 0.66 0.517242
Target:  5'- gCGgUGGCCGCGCUgGcGGcGGCGgUGAu -3'
miRNA:   3'- -GCgGCCGGUGCGAaC-CCuCCGCgGCU- -5'
25506 3' -64 NC_005337.1 + 2164 0.66 0.517242
Target:  5'- aGCCuGCCGCGCac----GGCGCCGAc -3'
miRNA:   3'- gCGGcCGGUGCGaacccuCCGCGGCU- -5'
25506 3' -64 NC_005337.1 + 124284 0.66 0.508864
Target:  5'- gCGCCGGCCAgguaaucgaggaagaGCUagccGaGGAGGcCGCCGu -3'
miRNA:   3'- -GCGGCCGGUg--------------CGAa---C-CCUCC-GCGGCu -5'
25506 3' -64 NC_005337.1 + 50381 0.66 0.507937
Target:  5'- gGCaCGggcGCCugGCgcGGGGGcGCGCCGc -3'
miRNA:   3'- gCG-GC---CGGugCGaaCCCUC-CGCGGCu -5'
25506 3' -64 NC_005337.1 + 105056 0.66 0.502387
Target:  5'- aCGcCCGGCCGCGCggcgcUGcgcagcgccuccuucGGcacGGGCGCCGc -3'
miRNA:   3'- -GC-GGCCGGUGCGa----AC---------------CC---UCCGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.