Results 21 - 40 of 230 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25507 | 5' | -62.1 | NC_005337.1 | + | 25393 | 0.75 | 0.23296 |
Target: 5'- cGCCGCGGUgGCGGcCuCGGAGuucggguuccgcUCGCa -3' miRNA: 3'- cCGGCGCCAgCGCCaGcGCCUC------------AGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 21404 | 0.75 | 0.235117 |
Target: 5'- cGGCCGCggcaucgucgacgugGGcCGCGGccagcUCGCGGAGcuUCGCc -3' miRNA: 3'- -CCGGCG---------------CCaGCGCC-----AGCGCCUC--AGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 2198 | 0.74 | 0.24955 |
Target: 5'- aGGCgGCGGaCGCGGgCGCGGcccgGGcCGCg -3' miRNA: 3'- -CCGgCGCCaGCGCCaGCGCC----UCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 123193 | 0.74 | 0.24955 |
Target: 5'- aGCUGCGGUCGCGGcggcgaccgaUCuGCGGccUCGCg -3' miRNA: 3'- cCGGCGCCAGCGCC----------AG-CGCCucAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 36495 | 0.74 | 0.255292 |
Target: 5'- uGGCCGCGGcCGCGG-CGCucGG-CGCg -3' miRNA: 3'- -CCGGCGCCaGCGCCaGCGccUCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 564 | 0.74 | 0.261143 |
Target: 5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3' miRNA: 3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 564 | 0.74 | 0.261143 |
Target: 5'- cGGCCGCGcGUacgcCGCGGccgCGCGGaAGcCGCc -3' miRNA: 3'- -CCGGCGC-CA----GCGCCa--GCGCC-UCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 21071 | 0.74 | 0.267103 |
Target: 5'- cGCCGUaGUCGUGGUCcCGGAcGUCGUc -3' miRNA: 3'- cCGGCGcCAGCGCCAGcGCCU-CAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 5426 | 0.73 | 0.271339 |
Target: 5'- cGGCCGUGGUcaggcagaggagcaCGCGGUCGagcaucucCGGGGgcagggCGCa -3' miRNA: 3'- -CCGGCGCCA--------------GCGCCAGC--------GCCUCa-----GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 30644 | 0.73 | 0.273172 |
Target: 5'- aGCCGaggauGGcgCGCGG-CGCGGAGUUGUg -3' miRNA: 3'- cCGGCg----CCa-GCGCCaGCGCCUCAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 110360 | 0.73 | 0.279351 |
Target: 5'- uGCCGCGGgcgCGCGGgcgCGCGGcAG-CGa -3' miRNA: 3'- cCGGCGCCa--GCGCCa--GCGCC-UCaGCg -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 2697 | 0.73 | 0.279351 |
Target: 5'- aGCUGCGG-CGUGGggaCGCGGAGgagcacgagCGCg -3' miRNA: 3'- cCGGCGCCaGCGCCa--GCGCCUCa--------GCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 2295 | 0.73 | 0.279351 |
Target: 5'- aGGCUGCGG-CGgGGUCG-GGAG-CGUc -3' miRNA: 3'- -CCGGCGCCaGCgCCAGCgCCUCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 52021 | 0.73 | 0.285641 |
Target: 5'- cGGCCGCGcGcgCGCGGUCaUGGAGUUcCg -3' miRNA: 3'- -CCGGCGC-Ca-GCGCCAGcGCCUCAGcG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 20769 | 0.73 | 0.285641 |
Target: 5'- gGGCCGCGGccaCGCGcuUCGCGGGGaCGg -3' miRNA: 3'- -CCGGCGCCa--GCGCc-AGCGCCUCaGCg -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 66077 | 0.73 | 0.298554 |
Target: 5'- cGGaCGCGGcCGCGG-CgGCGGAGgCGCu -3' miRNA: 3'- -CCgGCGCCaGCGCCaG-CGCCUCaGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 19404 | 0.73 | 0.304511 |
Target: 5'- gGGCCGaaggcgccgauguCGGagaCGCGGUCGCGGAGguaGUc -3' miRNA: 3'- -CCGGC-------------GCCa--GCGCCAGCGCCUCag-CG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 12144 | 0.72 | 0.325726 |
Target: 5'- uGGUCGCGGacUCGaCGaUCGCGGAGaaGCa -3' miRNA: 3'- -CCGGCGCC--AGC-GCcAGCGCCUCagCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 132548 | 0.72 | 0.331376 |
Target: 5'- uGGCCGCGGUgGuuGUCGuCGGcacgguggccguGUCGCu -3' miRNA: 3'- -CCGGCGCCAgCgcCAGC-GCCu-----------CAGCG- -5' |
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25507 | 5' | -62.1 | NC_005337.1 | + | 977 | 0.72 | 0.332799 |
Target: 5'- aGCgGCGGggcuggCGCGGcgCGCGGAgggcgggcGUCGCc -3' miRNA: 3'- cCGgCGCCa-----GCGCCa-GCGCCU--------CAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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