miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 129244 0.66 0.796095
Target:  5'- gCUGCAUCuGUACGUGCucaaCGcCGACg -3'
miRNA:   3'- gGACGUGGuCGUGCGCGuca-GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 128687 0.7 0.529997
Target:  5'- cCCcGC-CgGGCACGCGCGcUgGCGACg -3'
miRNA:   3'- -GGaCGuGgUCGUGCGCGUcAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 128303 0.72 0.445132
Target:  5'- gCCUgGCGCCGucuGCucGCGCGCGGcgcgagCGCGACu -3'
miRNA:   3'- -GGA-CGUGGU---CG--UGCGCGUCa-----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 128065 0.74 0.352645
Target:  5'- gCUGCACCAcCACaUGCAGUCGCcGCg -3'
miRNA:   3'- gGACGUGGUcGUGcGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 127629 0.66 0.796095
Target:  5'- gUUGUACC-GCGCG-GCGGUCuucaacccuGCGGCg -3'
miRNA:   3'- gGACGUGGuCGUGCgCGUCAG---------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 127571 0.68 0.650511
Target:  5'- gCUGCugCuggaGGCGgGCGCAGcCGUgGACg -3'
miRNA:   3'- gGACGugG----UCGUgCGCGUCaGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 127372 0.72 0.454198
Target:  5'- --cGCGCCGGCgcggacccGCGCGCg--CGCGACa -3'
miRNA:   3'- ggaCGUGGUCG--------UGCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 126989 0.66 0.793405
Target:  5'- aCUGCuacguCCAGCACgacuacguccagcuGCGC-GUCGUGGa -3'
miRNA:   3'- gGACGu----GGUCGUG--------------CGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 126446 0.75 0.281094
Target:  5'- gCgUGUACCAcCGCGCGCuGUCGCGGa -3'
miRNA:   3'- -GgACGUGGUcGUGCGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 126418 0.67 0.720628
Target:  5'- gCC-GC-CCGGCGCGCGaCGG-CGCG-Cg -3'
miRNA:   3'- -GGaCGuGGUCGUGCGC-GUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 126197 0.74 0.352645
Target:  5'- aCUGUGCCGucGCGCGUccucGCGGUCGCGGa -3'
miRNA:   3'- gGACGUGGU--CGUGCG----CGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 124291 0.69 0.609939
Target:  5'- cCCUGCcgugGCCgAGgACGCgGCcuccGUCGCGGCg -3'
miRNA:   3'- -GGACG----UGG-UCgUGCG-CGu---CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 123857 0.67 0.740122
Target:  5'- gCgUGCAUggaCGGCGgGCGCGG-CGCGuACg -3'
miRNA:   3'- -GgACGUG---GUCGUgCGCGUCaGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 123645 0.68 0.630222
Target:  5'- cUCUGCAgCGGCGCGa-CGGUCGUccuGGCg -3'
miRNA:   3'- -GGACGUgGUCGUGCgcGUCAGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 123610 0.7 0.529997
Target:  5'- aCCcGcCGCCGGCcgGCGCGCGGUCcauaGACg -3'
miRNA:   3'- -GGaC-GUGGUCG--UGCGCGUCAGcg--CUG- -5'
25508 3' -58.6 NC_005337.1 + 123179 0.66 0.768646
Target:  5'- cCCgGUACCucuccaGCuGCGGUCGCGGCg -3'
miRNA:   3'- -GGaCGUGGucgug-CG-CGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 122387 0.67 0.710765
Target:  5'- gCgUGCGCgAGguCGUGCuG-CGCGGCg -3'
miRNA:   3'- -GgACGUGgUCguGCGCGuCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 121988 0.72 0.436167
Target:  5'- uCgUGCGCgAGCuccuGCGCGCGGggUGCGACc -3'
miRNA:   3'- -GgACGUGgUCG----UGCGCGUCa-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 121554 0.66 0.772373
Target:  5'- uCCgGCACCuccucgagcgcggcGCGCGCGCGGaCGCcACc -3'
miRNA:   3'- -GGaCGUGGu-------------CGUGCGCGUCaGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 121208 0.67 0.69085
Target:  5'- uCC-GCGCC--CGCGCGCAG-CaGCGACa -3'
miRNA:   3'- -GGaCGUGGucGUGCGCGUCaG-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.