Results 21 - 40 of 354 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 3' | -58.6 | NC_005337.1 | + | 11735 | 0.73 | 0.392968 |
Target: 5'- aCCgGCugCAGCGCGCGUcGcCGCGcCa -3' miRNA: 3'- -GGaCGugGUCGUGCGCGuCaGCGCuG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 106023 | 0.73 | 0.376483 |
Target: 5'- --cGCACguGCGCGUGguGccgCGCGACg -3' miRNA: 3'- ggaCGUGguCGUGCGCguCa--GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 670 | 0.76 | 0.255875 |
Target: 5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3' miRNA: 3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 80354 | 0.81 | 0.120877 |
Target: 5'- aCCUGaACCAGCACGCGUucgcgccGGUCGCGGa -3' miRNA: 3'- -GGACgUGGUCGUGCGCG-------UCAGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 64008 | 0.72 | 0.445132 |
Target: 5'- gCCgcgGCuuCCGGCacaGCGCGCAGcgCGUGGCg -3' miRNA: 3'- -GGa--CGu-GGUCG---UGCGCGUCa-GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 33037 | 0.72 | 0.418556 |
Target: 5'- uCCaGCGCgAGCACGCGCGcGgacgccucCGCGACc -3' miRNA: 3'- -GGaCGUGgUCGUGCGCGU-Ca-------GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 126197 | 0.74 | 0.352645 |
Target: 5'- aCUGUGCCGucGCGCGUccucGCGGUCGCGGa -3' miRNA: 3'- gGACGUGGU--CGUGCG----CGUCAGCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 4134 | 0.82 | 0.10644 |
Target: 5'- gCgaGCGCCAGCGCGCGCGaccacGUaCGCGACa -3' miRNA: 3'- -GgaCGUGGUCGUGCGCGU-----CA-GCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 131470 | 0.72 | 0.418556 |
Target: 5'- uCCUGCAgCAGCGCcuaGUGCAcaUGCGGCa -3' miRNA: 3'- -GGACGUgGUCGUG---CGCGUcaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 132374 | 0.9 | 0.031144 |
Target: 5'- uCCUGCACCAGCACGCGgAGUCGUaccGGCc -3' miRNA: 3'- -GGACGUGGUCGUGCGCgUCAGCG---CUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 91731 | 0.73 | 0.376483 |
Target: 5'- gCC-GCACCAGCGCcCGCAG-CGCGuCc -3' miRNA: 3'- -GGaCGUGGUCGUGcGCGUCaGCGCuG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 45949 | 0.73 | 0.392968 |
Target: 5'- --cGCGCCGGCGCGCGUGGcguccaCGCuGACg -3' miRNA: 3'- ggaCGUGGUCGUGCGCGUCa-----GCG-CUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 4486 | 0.74 | 0.322557 |
Target: 5'- cUCUGCaucGCCAGCACGUGCA---GCGGCg -3' miRNA: 3'- -GGACG---UGGUCGUGCGCGUcagCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 65121 | 0.76 | 0.262001 |
Target: 5'- gCUGCAgCAGCACGCGCgAGaCGCG-Cu -3' miRNA: 3'- gGACGUgGUCGUGCGCG-UCaGCGCuG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 33523 | 0.77 | 0.226994 |
Target: 5'- gCCgUGCGCCGgcuGCACGCGUcGUCGcCGACg -3' miRNA: 3'- -GG-ACGUGGU---CGUGCGCGuCAGC-GCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 57275 | 0.8 | 0.148781 |
Target: 5'- gCCgcgcgGgGCCGGCGCGCGCGGcUGCGGCg -3' miRNA: 3'- -GGa----CgUGGUCGUGCGCGUCaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 127372 | 0.72 | 0.454198 |
Target: 5'- --cGCGCCGGCgcggacccGCGCGCg--CGCGACa -3' miRNA: 3'- ggaCGUGGUCG--------UGCGCGucaGCGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 17178 | 0.72 | 0.448746 |
Target: 5'- aCCgacaGCGCCAGCaggGCGCGCGGUagccacauggcgucuUGCGAa -3' miRNA: 3'- -GGa---CGUGGUCG---UGCGCGUCA---------------GCGCUg -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 64364 | 0.72 | 0.442432 |
Target: 5'- gCCgUGU-CCAGCGCGCGCAGgagcacguugucggaGCGGCg -3' miRNA: 3'- -GG-ACGuGGUCGUGCGCGUCag-------------CGCUG- -5' |
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25508 | 3' | -58.6 | NC_005337.1 | + | 115350 | 0.72 | 0.427308 |
Target: 5'- gCCUGCugUucgGGUACGCGCucaAGccCGCGACg -3' miRNA: 3'- -GGACGugG---UCGUGCGCG---UCa-GCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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