miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 113615 0.67 0.776301
Target:  5'- cCCUCuGGuccGCGC-CGUGCGaGGCCGa -3'
miRNA:   3'- aGGAGuUC---UGCGaGUACGCgCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 113157 0.66 0.845492
Target:  5'- gUUCgCGGuGCGCUgCGUG-GCGGCCGGc -3'
miRNA:   3'- -AGGaGUUcUGCGA-GUACgCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 108560 0.75 0.351036
Target:  5'- gCCU---GACGCUgGcgGCGCGGCCGGa -3'
miRNA:   3'- aGGAguuCUGCGAgUa-CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 107104 0.67 0.766992
Target:  5'- gCCUCAAGACGUcgUCuucGaCGCGGCgGu -3'
miRNA:   3'- aGGAGUUCUGCG--AGua-C-GCGCCGgCc -5'
25509 5' -57.5 NC_005337.1 + 103992 0.67 0.803432
Target:  5'- gCCgUCcuGGCGCUCAccUGCGC-GCCGu -3'
miRNA:   3'- aGG-AGuuCUGCGAGU--ACGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 103858 0.66 0.845492
Target:  5'- aUCCUCAAGcgGCaGUUCGcggaGCGCGGCgGc -3'
miRNA:   3'- -AGGAGUUC--UG-CGAGUa---CGCGCCGgCc -5'
25509 5' -57.5 NC_005337.1 + 102995 0.68 0.718855
Target:  5'- cCCUC-GGACGUgccCGaGCGCGGCCc- -3'
miRNA:   3'- aGGAGuUCUGCGa--GUaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 102429 0.73 0.452385
Target:  5'- aUCCcCGAGuacgugaacGCGCUCAU-CGCGGCCGa -3'
miRNA:   3'- -AGGaGUUC---------UGCGAGUAcGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 102233 0.66 0.853361
Target:  5'- cCCggcuGugGCgCGUGCaGaCGGCCGGg -3'
miRNA:   3'- aGGaguuCugCGaGUACG-C-GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 101563 0.66 0.853361
Target:  5'- uUCCUCAAGGagcUGCUCGUGaGCGGa--- -3'
miRNA:   3'- -AGGAGUUCU---GCGAGUACgCGCCggcc -5'
25509 5' -57.5 NC_005337.1 + 101502 0.69 0.668887
Target:  5'- -gCUCAugcgcgaGCGCUCc-GCGCGGCUGGa -3'
miRNA:   3'- agGAGUuc-----UGCGAGuaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 101107 0.74 0.391265
Target:  5'- aUCCUCucgaAGGACGaCUCAgaGCGCGGCUGc -3'
miRNA:   3'- -AGGAG----UUCUGC-GAGUa-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 100014 0.69 0.648634
Target:  5'- gUCCUCAAGGCGUaCcuGUGCGCGcGCa-- -3'
miRNA:   3'- -AGGAGUUCUGCGaG--UACGCGC-CGgcc -5'
25509 5' -57.5 NC_005337.1 + 99697 0.67 0.803432
Target:  5'- gCUUCGAcGCGCUgc-GCGCGGCCa- -3'
miRNA:   3'- aGGAGUUcUGCGAguaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 99454 0.73 0.468002
Target:  5'- aCCUCGuGGACGCgcgCGUGCGCgagggcgucuucguGGCCGu -3'
miRNA:   3'- aGGAGU-UCUGCGa--GUACGCG--------------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 98646 0.66 0.852583
Target:  5'- cCCUCcuGAUGCUCGUcaucgugGUGCuGGgCGGa -3'
miRNA:   3'- aGGAGuuCUGCGAGUA-------CGCG-CCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 96124 0.66 0.82077
Target:  5'- gCCgcgCAGGAUGC-----CGCGGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGaguacGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 95890 0.76 0.292983
Target:  5'- gUCUagCAGGGCGCUCGUGCucgcggcgacgGCGGCCGc -3'
miRNA:   3'- -AGGa-GUUCUGCGAGUACG-----------CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 95108 0.73 0.452385
Target:  5'- cUCCUCGAGGCGCUC----GCGGUCGu -3'
miRNA:   3'- -AGGAGUUCUGCGAGuacgCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 94554 0.67 0.79453
Target:  5'- cUCCgagUCGAuGCGCUUGauggGCGCGGCCa- -3'
miRNA:   3'- -AGG---AGUUcUGCGAGUa---CGCGCCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.