miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 101725 0.68 0.902059
Target:  5'- cGGCuCAAGGAcAUCCucacCGUGCGC-CGc -3'
miRNA:   3'- cCCG-GUUCCU-UAGGua--GUACGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 101086 0.68 0.920453
Target:  5'- -cGCCGucGGGAGggcCCGUCcgGCGCGgGg -3'
miRNA:   3'- ccCGGU--UCCUUa--GGUAGuaCGCGUgC- -5'
25510 5' -53.2 NC_005337.1 + 100789 0.68 0.914571
Target:  5'- -uGCaCGAGGAGUCUA-CGUGCGCcugGCGc -3'
miRNA:   3'- ccCG-GUUCCUUAGGUaGUACGCG---UGC- -5'
25510 5' -53.2 NC_005337.1 + 99041 0.77 0.435963
Target:  5'- aGGGCCAucGAAUCCGUCAcGCuCACGc -3'
miRNA:   3'- -CCCGGUucCUUAGGUAGUaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98991 0.77 0.458437
Target:  5'- gGGGCCGAGGuggagccgccccCCGagGUGCGCGCGg -3'
miRNA:   3'- -CCCGGUUCCuua---------GGUagUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 98492 0.66 0.958487
Target:  5'- -cGCCGGcGGcGUCCGUCAUGacaCGCGCc -3'
miRNA:   3'- ccCGGUU-CCuUAGGUAGUAC---GCGUGc -5'
25510 5' -53.2 NC_005337.1 + 98037 0.68 0.895432
Target:  5'- cGGGCUggGGuucGUCCGgga-GCGCGCc -3'
miRNA:   3'- -CCCGGuuCCu--UAGGUaguaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 95271 0.67 0.941458
Target:  5'- aGGGUCAGccgguggguGGAcaugacgaGUCCGUag-GCGCGCGg -3'
miRNA:   3'- -CCCGGUU---------CCU--------UAGGUAguaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 95230 0.67 0.931459
Target:  5'- cGGUCGcGcGAcugGUCCGugcacUCGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuC-CU---UAGGU-----AGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 94811 0.73 0.668804
Target:  5'- cGGCac-GGAGgcgucguacUCCAUCGUGCGCACc -3'
miRNA:   3'- cCCGguuCCUU---------AGGUAGUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 91526 0.73 0.658329
Target:  5'- cGGGCgcgaGAGGcGUCgGUCAgcaGCGCGCGg -3'
miRNA:   3'- -CCCGg---UUCCuUAGgUAGUa--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 91092 0.69 0.857961
Target:  5'- uGGCCGGGGcgaucagcggcgaGGUCCggUcgGCGCGCa -3'
miRNA:   3'- cCCGGUUCC-------------UUAGGuaGuaCGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 90188 0.66 0.965574
Target:  5'- aGGCCGGGGAagaagucgcAUCCGUUugucaGCGC-CGc -3'
miRNA:   3'- cCCGGUUCCU---------UAGGUAGua---CGCGuGC- -5'
25510 5' -53.2 NC_005337.1 + 89176 0.68 0.920453
Target:  5'- uGGcGCCGAGGcGUCUAUUAcguaGgGCACGu -3'
miRNA:   3'- -CC-CGGUUCCuUAGGUAGUa---CgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 88573 0.66 0.962146
Target:  5'- cGGGCCGGGGGuUCCg----GCuCACGg -3'
miRNA:   3'- -CCCGGUUCCUuAGGuaguaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 87803 0.7 0.834106
Target:  5'- cGGGCCAcccacaccaccAGGAGUCgCAcgCGUccGCGUACGc -3'
miRNA:   3'- -CCCGGU-----------UCCUUAG-GUa-GUA--CGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 86500 0.68 0.90844
Target:  5'- uGGCgGAGGAGUCCGagAgcCGCAUGg -3'
miRNA:   3'- cCCGgUUCCUUAGGUagUacGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 86462 0.67 0.945631
Target:  5'- aGGCCGgcgucgaagcgcgAGGggUCgCA-CGUGCGCAg- -3'
miRNA:   3'- cCCGGU-------------UCCuuAG-GUaGUACGCGUgc -5'
25510 5' -53.2 NC_005337.1 + 86163 0.68 0.913969
Target:  5'- uGGCgGGGGAGggguagcUgCAgcgCAUGCGCGCGc -3'
miRNA:   3'- cCCGgUUCCUU-------AgGUa--GUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 86119 0.68 0.922735
Target:  5'- -cGCgCGAGGAGUCCGgcuccgugcccaucuUCA-GCGCGCa -3'
miRNA:   3'- ccCG-GUUCCUUAGGU---------------AGUaCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.