miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 5' -53.2 NC_005337.1 + 346 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 163 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 41615 0.7 0.807717
Target:  5'- uGGCgAAGGAggCCGUgGUGCGaCGCc -3'
miRNA:   3'- cCCGgUUCCUuaGGUAgUACGC-GUGc -5'
25510 5' -53.2 NC_005337.1 + 130520 0.74 0.626808
Target:  5'- aGGUCAuGGAGUUCcUgGUGCGCGCGg -3'
miRNA:   3'- cCCGGUuCCUUAGGuAgUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 118785 0.67 0.936584
Target:  5'- -cGCCGgcGGcGGcgCCGUCGUGcCGCGCGc -3'
miRNA:   3'- ccCGGU--UC-CUuaGGUAGUAC-GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 117821 0.68 0.920453
Target:  5'- uGGcGCCcGGGGAcCCGggcgggGUGCGCACGc -3'
miRNA:   3'- -CC-CGGuUCCUUaGGUag----UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 49 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 23542 0.76 0.483463
Target:  5'- cGGGCCAuGG---CCAUCAUGCGguCGg -3'
miRNA:   3'- -CCCGGUuCCuuaGGUAGUACGCguGC- -5'
25510 5' -53.2 NC_005337.1 + 89176 0.68 0.920453
Target:  5'- uGGcGCCGAGGcGUCUAUUAcguaGgGCACGu -3'
miRNA:   3'- -CC-CGGUUCCuUAGGUAGUa---CgCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 99041 0.77 0.435963
Target:  5'- aGGGCCAucGAAUCCGUCAcGCuCACGc -3'
miRNA:   3'- -CCCGGUucCUUAGGUAGUaCGcGUGC- -5'
25510 5' -53.2 NC_005337.1 + 102 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 407 0.68 0.90844
Target:  5'- cGGGCUGacucgagaacucGGGAggCgGUCGUGCGgACGc -3'
miRNA:   3'- -CCCGGU------------UCCUuaGgUAGUACGCgUGC- -5'
25510 5' -53.2 NC_005337.1 + 101993 0.69 0.866544
Target:  5'- cGGCCGAGuucacgcccGAGUaCAUCGUGCaGCGCGc -3'
miRNA:   3'- cCCGGUUC---------CUUAgGUAGUACG-CGUGC- -5'
25510 5' -53.2 NC_005337.1 + 31677 0.7 0.837497
Target:  5'- cGGUCcGGGAAgaacacgcaguagaCCAUCuUGCGCACGa -3'
miRNA:   3'- cCCGGuUCCUUa-------------GGUAGuACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 33975 0.72 0.710294
Target:  5'- cGGCCAGGG---CCAggaagGUGCGCACGg -3'
miRNA:   3'- cCCGGUUCCuuaGGUag---UACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 103102 0.74 0.637322
Target:  5'- cGGCCGAcaucgaccucccGGAGUgcggCAUCGUGCGCGCGc -3'
miRNA:   3'- cCCGGUU------------CCUUAg---GUAGUACGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 75113 0.67 0.946083
Target:  5'- cGGCCuggGGGAGgaaCGUCGUGgggcuguacCGCACGg -3'
miRNA:   3'- cCCGGu--UCCUUag-GUAGUAC---------GCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 95271 0.67 0.941458
Target:  5'- aGGGUCAGccgguggguGGAcaugacgaGUCCGUag-GCGCGCGg -3'
miRNA:   3'- -CCCGGUU---------CCU--------UAGGUAguaCGCGUGC- -5'
25510 5' -53.2 NC_005337.1 + 128773 0.67 0.936083
Target:  5'- aGGCgCAGGcggauucGggUCCAcgggCGUGCGCACc -3'
miRNA:   3'- cCCG-GUUC-------CuuAGGUa---GUACGCGUGc -5'
25510 5' -53.2 NC_005337.1 + 101086 0.68 0.920453
Target:  5'- -cGCCGucGGGAGggcCCGUCcgGCGCGgGg -3'
miRNA:   3'- ccCGGU--UCCUUa--GGUAGuaCGCGUgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.