miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 3' -59 NC_005337.1 + 253 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 13740 0.66 0.81094
Target:  5'- uGGCuaGUGGugaGCGUGAucuccGCGCGCccgaacGCGGCGa -3'
miRNA:   3'- -CCG--CGCC---UGCACU-----UGCGCG------CGCUGCa -5'
25512 3' -59 NC_005337.1 + 131 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 53021 0.66 0.81094
Target:  5'- cGGCuGCGGcuCGUG-ACGCugaGCGACGc -3'
miRNA:   3'- -CCG-CGCCu-GCACuUGCGcg-CGCUGCa -5'
25512 3' -59 NC_005337.1 + 44938 0.66 0.81094
Target:  5'- cGCGCGGAucgcucaucuuCGUGuccAGCGcCGCGuCGAUGa -3'
miRNA:   3'- cCGCGCCU-----------GCAC---UUGC-GCGC-GCUGCa -5'
25512 3' -59 NC_005337.1 + 65033 0.66 0.81094
Target:  5'- aGCGUcaccGGcACGUccaGGCGCGCGCGcACGUu -3'
miRNA:   3'- cCGCG----CC-UGCAc--UUGCGCGCGC-UGCA- -5'
25512 3' -59 NC_005337.1 + 253 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 17 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 192 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 815 0.66 0.81094
Target:  5'- -cCGCGGAgcCGUccGCGCGCGCGGg-- -3'
miRNA:   3'- ccGCGCCU--GCAcuUGCGCGCGCUgca -5'
25512 3' -59 NC_005337.1 + 122115 0.66 0.81094
Target:  5'- cGGCGCGGACaucAACGCGaugaaCGUGuACGg -3'
miRNA:   3'- -CCGCGCCUGcacUUGCGC-----GCGC-UGCa -5'
25512 3' -59 NC_005337.1 + 375 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 131 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 85519 0.66 0.81094
Target:  5'- -cCGCGGugGUcaccgucgucuGGAUGUugaGCGCGGCGg -3'
miRNA:   3'- ccGCGCCugCA-----------CUUGCG---CGCGCUGCa -5'
25512 3' -59 NC_005337.1 + 314 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 375 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 314 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 192 0.66 0.81094
Target:  5'- cGUGCGGACGcacGGACGCaCG-GACGc -3'
miRNA:   3'- cCGCGCCUGCa--CUUGCGcGCgCUGCa -5'
25512 3' -59 NC_005337.1 + 106642 0.66 0.81094
Target:  5'- uGGCGCGcuccgccaaGAUcccgGAGCGCGaGCGGCGg -3'
miRNA:   3'- -CCGCGC---------CUGca--CUUGCGCgCGCUGCa -5'
25512 3' -59 NC_005337.1 + 3380 0.66 0.81094
Target:  5'- uGCGCGGcCaUGAG-GUGCaGCGGCGUg -3'
miRNA:   3'- cCGCGCCuGcACUUgCGCG-CGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.