miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 93746 0.66 0.88855
Target:  5'- cGCGCGCCGCgGCGgCUGC-AUG-CCGc -3'
miRNA:   3'- -UGUGCGGUGaCGU-GACGaUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 125390 0.66 0.88855
Target:  5'- cCGCGCCugUgGCGCgGCccUugGUCCuGa -3'
miRNA:   3'- uGUGCGGugA-CGUGaCG--AugCAGGuC- -5'
25512 5' -55.8 NC_005337.1 + 29725 0.66 0.881503
Target:  5'- cGCACGCgCGC-GCGgUGUUGCGgcggaCCAGc -3'
miRNA:   3'- -UGUGCG-GUGaCGUgACGAUGCa----GGUC- -5'
25512 5' -55.8 NC_005337.1 + 133147 0.66 0.881503
Target:  5'- aGCugGUCGC-GCGCgUGCUGCGgcugcucCCGGc -3'
miRNA:   3'- -UGugCGGUGaCGUG-ACGAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 105292 0.66 0.881503
Target:  5'- gGC-CGCCGCUGCccgcagucGCUGCgcACGccCCAGu -3'
miRNA:   3'- -UGuGCGGUGACG--------UGACGa-UGCa-GGUC- -5'
25512 5' -55.8 NC_005337.1 + 5966 0.66 0.881503
Target:  5'- uCGCGCCGC-GCGCgaGCagACGggCCAGg -3'
miRNA:   3'- uGUGCGGUGaCGUGa-CGa-UGCa-GGUC- -5'
25512 5' -55.8 NC_005337.1 + 133147 0.66 0.881503
Target:  5'- aGCugGUCGC-GCGCgUGCUGCGgcugcucCCGGc -3'
miRNA:   3'- -UGugCGGUGaCGUG-ACGAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 9353 0.66 0.881503
Target:  5'- gACGCGUCGCcuggacgcGCGCUGC-GCGUUCGa -3'
miRNA:   3'- -UGUGCGGUGa-------CGUGACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 34606 0.66 0.877165
Target:  5'- cGCACGCCACgggcGCGCccagccgcgcggcgaUGCcgcgcACGUCCGu -3'
miRNA:   3'- -UGUGCGGUGa---CGUG---------------ACGa----UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 98839 0.66 0.874228
Target:  5'- uCGCGcCCACcGCGCcgUGC-GCGUCCAu -3'
miRNA:   3'- uGUGC-GGUGaCGUG--ACGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 132593 0.66 0.874228
Target:  5'- -gACGCgCGCUGCgGCUGCg--GUUCAGg -3'
miRNA:   3'- ugUGCG-GUGACG-UGACGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 48174 0.66 0.874228
Target:  5'- cGCGCGCgGagGCGCUGCUGCGggagCUg- -3'
miRNA:   3'- -UGUGCGgUgaCGUGACGAUGCa---GGuc -5'
25512 5' -55.8 NC_005337.1 + 109179 0.66 0.874228
Target:  5'- cCGCGCCGCgcggGCGgaGCUcgGCGUCg-- -3'
miRNA:   3'- uGUGCGGUGa---CGUgaCGA--UGCAGguc -5'
25512 5' -55.8 NC_005337.1 + 109444 0.66 0.874228
Target:  5'- cACGCGCCGCUcgaGCACgGCgaggaaGUCgCGGa -3'
miRNA:   3'- -UGUGCGGUGA---CGUGaCGaug---CAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 64275 0.66 0.866727
Target:  5'- gGCGCGCCGgaGCaACUGCUcuucgacCGUCUg- -3'
miRNA:   3'- -UGUGCGGUgaCG-UGACGAu------GCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 129886 0.66 0.866727
Target:  5'- gGCAucuCGCCGCUGCACaug-GCGgCCGGg -3'
miRNA:   3'- -UGU---GCGGUGACGUGacgaUGCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 36271 0.66 0.866727
Target:  5'- gUACGCgAUgccGCACUGC-GCGUCCu- -3'
miRNA:   3'- uGUGCGgUGa--CGUGACGaUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 95340 0.66 0.866727
Target:  5'- aGCGCGCCGugGCGCUGCgACa-CCGGg -3'
miRNA:   3'- -UGUGCGGUgaCGUGACGaUGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 101196 0.66 0.866727
Target:  5'- cCGCGUCGCUgGUGCgaUGCcugaugGCGUCCGGg -3'
miRNA:   3'- uGUGCGGUGA-CGUG--ACGa-----UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 86385 0.66 0.866727
Target:  5'- cCGCGuuuauCCACUGCGCgcagaaGuCUGCGUCCGc -3'
miRNA:   3'- uGUGC-----GGUGACGUGa-----C-GAUGCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.