miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25513 5' -61.5 NC_005337.1 + 133692 0.66 0.653078
Target:  5'- cGUUCGCCGGcggcuUCCGcGCgGCCgcGGCg- -3'
miRNA:   3'- aCGAGCGGCCu----AGGC-CGaUGG--CCGag -5'
25513 5' -61.5 NC_005337.1 + 3452 0.66 0.653078
Target:  5'- aGC-CGCCuGAUCaCGGCggcACUGGgUCg -3'
miRNA:   3'- aCGaGCGGcCUAG-GCCGa--UGGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 22031 0.66 0.653078
Target:  5'- gUGUUCGcCCGGcuguUCCGGaagACCGaGUUCc -3'
miRNA:   3'- -ACGAGC-GGCCu---AGGCCga-UGGC-CGAG- -5'
25513 5' -61.5 NC_005337.1 + 120360 0.66 0.653078
Target:  5'- cGCgUCcuuCgGGAcCCGGCgcgccUGCCGGCUCg -3'
miRNA:   3'- aCG-AGc--GgCCUaGGCCG-----AUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 133692 0.66 0.653078
Target:  5'- cGUUCGCCGGcggcuUCCGcGCgGCCgcGGCg- -3'
miRNA:   3'- aCGAGCGGCCu----AGGC-CGaUGG--CCGag -5'
25513 5' -61.5 NC_005337.1 + 42550 0.66 0.643099
Target:  5'- cUGCgggCGCUGG-UgCGGCUG-CGGCUg -3'
miRNA:   3'- -ACGa--GCGGCCuAgGCCGAUgGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 42411 0.66 0.643099
Target:  5'- gGcCUCGCUGuGcgCCGGCU-UCGGCg- -3'
miRNA:   3'- aC-GAGCGGC-CuaGGCCGAuGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 92046 0.66 0.640104
Target:  5'- aGCUgGCCgugcgcgaacucgcGGAcgaCCGGCUguACCGGCa- -3'
miRNA:   3'- aCGAgCGG--------------CCUa--GGCCGA--UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 68480 0.66 0.633113
Target:  5'- cGC-CGCCgcaccgGGcgCCGcGCUGCUGGCg- -3'
miRNA:   3'- aCGaGCGG------CCuaGGC-CGAUGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 7737 0.66 0.633113
Target:  5'- aGCcgguaGCCGGAUCCGGCgagcaUGGUg- -3'
miRNA:   3'- aCGag---CGGCCUAGGCCGaug--GCCGag -5'
25513 5' -61.5 NC_005337.1 + 132106 0.66 0.623126
Target:  5'- gUGCgCGUCGGcgCCGuGCgcgGCaGGCUCc -3'
miRNA:   3'- -ACGaGCGGCCuaGGC-CGa--UGgCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 99250 0.66 0.617136
Target:  5'- cGCUCGCCgcggacggcgacgcgGGGUUCGGCacggccgucUGCCuGGCg- -3'
miRNA:   3'- aCGAGCGG---------------CCUAGGCCG---------AUGG-CCGag -5'
25513 5' -61.5 NC_005337.1 + 133170 0.66 0.613145
Target:  5'- cUGCUC-CCGGcggCGGCgcugcGCCGGCUg -3'
miRNA:   3'- -ACGAGcGGCCuagGCCGa----UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 133170 0.66 0.613145
Target:  5'- cUGCUC-CCGGcggCGGCgcugcGCCGGCUg -3'
miRNA:   3'- -ACGAGcGGCCuagGCCGa----UGGCCGAg -5'
25513 5' -61.5 NC_005337.1 + 47648 0.66 0.613145
Target:  5'- aGUUCGCUGuGAcgagcCCGGCgcCCGGCa- -3'
miRNA:   3'- aCGAGCGGC-CUa----GGCCGauGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 128463 0.66 0.603178
Target:  5'- ---cCGCCGGA-CCGGCgcgggagACCGcguGCUCg -3'
miRNA:   3'- acgaGCGGCCUaGGCCGa------UGGC---CGAG- -5'
25513 5' -61.5 NC_005337.1 + 73022 0.66 0.603178
Target:  5'- -aCUCcCCGGAgaacgacgaCGGgaGCCGGCUCa -3'
miRNA:   3'- acGAGcGGCCUag-------GCCgaUGGCCGAG- -5'
25513 5' -61.5 NC_005337.1 + 129618 0.66 0.593232
Target:  5'- aGCUCGuCCGGcggcUCgUGGCcGCCGGgUCu -3'
miRNA:   3'- aCGAGC-GGCCu---AG-GCCGaUGGCCgAG- -5'
25513 5' -61.5 NC_005337.1 + 36551 0.66 0.593232
Target:  5'- gGCUgGgCGGcgCCGGCgagccaccccACCGGCg- -3'
miRNA:   3'- aCGAgCgGCCuaGGCCGa---------UGGCCGag -5'
25513 5' -61.5 NC_005337.1 + 69517 0.66 0.593232
Target:  5'- cGcCUCGCCGGAggCCucgucgaucgcaGGgaACCGGCg- -3'
miRNA:   3'- aC-GAGCGGCCUa-GG------------CCgaUGGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.