miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25516 5' -60.9 NC_005337.1 + 41399 0.66 0.646753
Target:  5'- -cGCggGCagAUGacgucCGGCGUCCGCGGGa -3'
miRNA:   3'- uaCGuaCGgaUAC-----GCCGCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 36548 0.66 0.646753
Target:  5'- -gGCG-GCUgg-GCGGCGCCgGCGa- -3'
miRNA:   3'- uaCGUaCGGauaCGCCGCGGgCGCcu -5'
25516 5' -60.9 NC_005337.1 + 56894 0.66 0.646753
Target:  5'- -cGCcgGCUgguguUGCGGCa-CCGCGGGa -3'
miRNA:   3'- uaCGuaCGGau---ACGCCGcgGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 35578 0.66 0.646753
Target:  5'- -cGgAUGCCUAgcgagGCGGaucCCCGcCGGAg -3'
miRNA:   3'- uaCgUACGGAUa----CGCCgc-GGGC-GCCU- -5'
25516 5' -60.9 NC_005337.1 + 131472 0.66 0.645737
Target:  5'- cUGCAgcagcGCCUAgugcacaUGCGGCaccgguccgcGCUCGUGGAc -3'
miRNA:   3'- uACGUa----CGGAU-------ACGCCG----------CGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 74938 0.66 0.645737
Target:  5'- -cGCGcgGCCgcgcggAUGCGGUGCuggggcuCCGCGGc -3'
miRNA:   3'- uaCGUa-CGGa-----UACGCCGCG-------GGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 3490 0.66 0.636594
Target:  5'- -aGCA-GCCgcaccgGCGGCGCCCaggucuGCGcGAa -3'
miRNA:   3'- uaCGUaCGGaua---CGCCGCGGG------CGC-CU- -5'
25516 5' -60.9 NC_005337.1 + 100756 0.66 0.636594
Target:  5'- -cGCGUGCagc--CGGCGCaCgGCGGAg -3'
miRNA:   3'- uaCGUACGgauacGCCGCG-GgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 126030 0.66 0.636594
Target:  5'- -cGCGUGCgUGUGUcucauGcGCGCCggUGCGGAc -3'
miRNA:   3'- uaCGUACGgAUACG-----C-CGCGG--GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 37680 0.66 0.636594
Target:  5'- uUGCuguucacGCCcGUGUGGaCGCCCGCGc- -3'
miRNA:   3'- uACGua-----CGGaUACGCC-GCGGGCGCcu -5'
25516 5' -60.9 NC_005337.1 + 64234 0.66 0.636594
Target:  5'- -gGCAgcGCCUcuuUGCGGCGC-UGCGGc -3'
miRNA:   3'- uaCGUa-CGGAu--ACGCCGCGgGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 43834 0.66 0.636594
Target:  5'- cUGCAgcggGCCg--GCGGCG-CgGUGGAg -3'
miRNA:   3'- uACGUa---CGGauaCGCCGCgGgCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 10812 0.66 0.636594
Target:  5'- -cGCAugaagaagaUGCC-GUGCuGGCGCUgcggCGCGGAg -3'
miRNA:   3'- uaCGU---------ACGGaUACG-CCGCGG----GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 99657 0.66 0.635578
Target:  5'- -gGCAUcGCCgc-GCGGCugggcgcGCCCGUGGc -3'
miRNA:   3'- uaCGUA-CGGauaCGCCG-------CGGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 99151 0.66 0.626432
Target:  5'- aGUGCGccGCaCUggGCGuccGCGCCgCGCGGAc -3'
miRNA:   3'- -UACGUa-CG-GAuaCGC---CGCGG-GCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 5584 0.66 0.626432
Target:  5'- -cGCGUcGCCagcGCGcGUGCCCgGCGGGg -3'
miRNA:   3'- uaCGUA-CGGauaCGC-CGCGGG-CGCCU- -5'
25516 5' -60.9 NC_005337.1 + 52999 0.66 0.625416
Target:  5'- -cGCGUGCucCUGUaGCGGCGgcaugaaCCUGCGGc -3'
miRNA:   3'- uaCGUACG--GAUA-CGCCGC-------GGGCGCCu -5'
25516 5' -60.9 NC_005337.1 + 77649 0.66 0.620336
Target:  5'- -aGCGUGCCcGUGCGcGaggucucgcagacgaUGUCCGUGGAc -3'
miRNA:   3'- uaCGUACGGaUACGC-C---------------GCGGGCGCCU- -5'
25516 5' -60.9 NC_005337.1 + 40532 0.66 0.616275
Target:  5'- cAUGCA-GCCgccGCGGCGCgCgGUGGu -3'
miRNA:   3'- -UACGUaCGGauaCGCCGCG-GgCGCCu -5'
25516 5' -60.9 NC_005337.1 + 122384 0.66 0.616275
Target:  5'- uGUGCGUGCgcgaggucgugCUGcGCGGCGgCgCGCGGc -3'
miRNA:   3'- -UACGUACG-----------GAUaCGCCGCgG-GCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.