miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25518 5' -56.3 NC_005337.1 + 77390 0.66 0.894126
Target:  5'- -gUUGAauGgCGCCAGGaUCUUCGuCGCc -3'
miRNA:   3'- gaAGCUguCgGCGGUCC-AGAAGC-GCG- -5'
25518 5' -56.3 NC_005337.1 + 91986 0.66 0.894126
Target:  5'- uCUUCGugGGCUuCCuGGcUCUgauguaCGCGCu -3'
miRNA:   3'- -GAAGCugUCGGcGGuCC-AGAa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 26742 0.66 0.894126
Target:  5'- -gUCGGugcucCGGUCGCCGcgaaacguGGUCgUCGUGCg -3'
miRNA:   3'- gaAGCU-----GUCGGCGGU--------CCAGaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 108637 0.66 0.887384
Target:  5'- -aUCGACgcGGCCGUggCGGG-CgacCGCGCg -3'
miRNA:   3'- gaAGCUG--UCGGCG--GUCCaGaa-GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 118915 0.66 0.887384
Target:  5'- --cCGAguGCgCGCCuGGaagCgUCGCGCg -3'
miRNA:   3'- gaaGCUguCG-GCGGuCCa--GaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 83507 0.66 0.887384
Target:  5'- -gUCGuaggaGGgCGCgAGGUCgaugCGCGCg -3'
miRNA:   3'- gaAGCug---UCgGCGgUCCAGaa--GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 42643 0.66 0.887384
Target:  5'- -gUCGACGGCUGCUccgugcGuGUCUgugGCGCg -3'
miRNA:   3'- gaAGCUGUCGGCGGu-----C-CAGAag-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 7228 0.66 0.887384
Target:  5'- cCUUCGgugcGCAccuccgcgcccGCCGCCAgcauGGUCUccacgaCGCGCa -3'
miRNA:   3'- -GAAGC----UGU-----------CGGCGGU----CCAGAa-----GCGCG- -5'
25518 5' -56.3 NC_005337.1 + 39266 0.66 0.887384
Target:  5'- --gCGcaGCAGCCGCCGcug--UCGCGCa -3'
miRNA:   3'- gaaGC--UGUCGGCGGUccagaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 74481 0.66 0.887384
Target:  5'- --cCGACGGCCuCguGGUCg-CGUGCc -3'
miRNA:   3'- gaaGCUGUCGGcGguCCAGaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 22623 0.66 0.886697
Target:  5'- uCUUCGagccggcGCGGauCCGCgAGGcCUUCgGCGCg -3'
miRNA:   3'- -GAAGC-------UGUC--GGCGgUCCaGAAG-CGCG- -5'
25518 5' -56.3 NC_005337.1 + 31879 0.66 0.880416
Target:  5'- --cCGugGGCa--C-GGUCUUCGCGCu -3'
miRNA:   3'- gaaGCugUCGgcgGuCCAGAAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 34745 0.66 0.880416
Target:  5'- -gUCGGCGGCgCaCCGGGcCgcgUCGuCGCa -3'
miRNA:   3'- gaAGCUGUCG-GcGGUCCaGa--AGC-GCG- -5'
25518 5' -56.3 NC_005337.1 + 5878 0.66 0.880416
Target:  5'- --gCGagaGCGGCCGCCAGcauggacucGUCgugUCGCGa -3'
miRNA:   3'- gaaGC---UGUCGGCGGUC---------CAGa--AGCGCg -5'
25518 5' -56.3 NC_005337.1 + 17179 0.66 0.880416
Target:  5'- --cCGACAG-CGCCAGcagggCGCGCg -3'
miRNA:   3'- gaaGCUGUCgGCGGUCcagaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 46022 0.66 0.880416
Target:  5'- --cCGcCGGCgCGCCGGcacgcacgacGUCUUCGCaGCa -3'
miRNA:   3'- gaaGCuGUCG-GCGGUC----------CAGAAGCG-CG- -5'
25518 5' -56.3 NC_005337.1 + 99309 0.66 0.880416
Target:  5'- gUUCcGCAG-CGCCGGGUCgucgacugcUCGCaGCg -3'
miRNA:   3'- gAAGcUGUCgGCGGUCCAGa--------AGCG-CG- -5'
25518 5' -56.3 NC_005337.1 + 90296 0.66 0.880416
Target:  5'- -cUCGGCcuccucGCCGCCGGG----CGCGCc -3'
miRNA:   3'- gaAGCUGu-----CGGCGGUCCagaaGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 64187 0.66 0.880416
Target:  5'- gUUCGugGGCaaggaCAGGg--UCGCGCa -3'
miRNA:   3'- gAAGCugUCGgcg--GUCCagaAGCGCG- -5'
25518 5' -56.3 NC_005337.1 + 97840 0.66 0.880416
Target:  5'- --cCGcGCAGCUgcaGCCGGGUgaggCGCGCg -3'
miRNA:   3'- gaaGC-UGUCGG---CGGUCCAgaa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.