miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 3' -55.2 NC_005337.1 + 127382 0.66 0.895469
Target:  5'- cGGACCCGCGCGc----GCGCgacaUGGACg -3'
miRNA:   3'- aUCUGGGCGUGUcucuaCGCG----AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 26995 0.66 0.895469
Target:  5'- cGGACCCGUccgGCAGccggaagcGGAUGUGCUccccGGCc -3'
miRNA:   3'- aUCUGGGCG---UGUC--------UCUACGCGAu---CUG- -5'
25519 3' -55.2 NC_005337.1 + 98139 0.66 0.895469
Target:  5'- aUGGACCCGCacgccgcgcacgACAGGGugccUGCGCacuuGAUg -3'
miRNA:   3'- -AUCUGGGCG------------UGUCUCu---ACGCGau--CUG- -5'
25519 3' -55.2 NC_005337.1 + 112395 0.66 0.88857
Target:  5'- aGGAgCgCCGCGCAGGccGUGCGgUAGGCc -3'
miRNA:   3'- aUCU-G-GGCGUGUCUc-UACGCgAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 6209 0.66 0.88857
Target:  5'- aAGGCgUGCACccuguccaGGAGG-GCGUUGGGCa -3'
miRNA:   3'- aUCUGgGCGUG--------UCUCUaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 43738 0.66 0.88857
Target:  5'- gAGAUCCGCACcGAGAaGCaGCUGa-- -3'
miRNA:   3'- aUCUGGGCGUGuCUCUaCG-CGAUcug -5'
25519 3' -55.2 NC_005337.1 + 87640 0.66 0.88857
Target:  5'- -cGACUCGCGgAGGuuGGUGCGgaAGAUg -3'
miRNA:   3'- auCUGGGCGUgUCU--CUACGCgaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 1157 0.66 0.881432
Target:  5'- gGGAgCgCGCcgGCGGAGcgGCccGCUAGGCg -3'
miRNA:   3'- aUCUgG-GCG--UGUCUCuaCG--CGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 99000 0.66 0.881432
Target:  5'- gUGGAgCCGCcCcccGAGGUGCGCgcGGCc -3'
miRNA:   3'- -AUCUgGGCGuGu--CUCUACGCGauCUG- -5'
25519 3' -55.2 NC_005337.1 + 35432 0.66 0.881432
Target:  5'- aUGGACgCGCACGGcgcGGUGgGCgcGACc -3'
miRNA:   3'- -AUCUGgGCGUGUCu--CUACgCGauCUG- -5'
25519 3' -55.2 NC_005337.1 + 53902 0.66 0.881432
Target:  5'- cGGcCCCGCugGCGGuGGaGaCGCUGGACg -3'
miRNA:   3'- aUCuGGGCG--UGUCuCUaC-GCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 84048 0.66 0.874057
Target:  5'- gAGGCgCGCACgacgcccucGGGGAgGCGCaGGGCg -3'
miRNA:   3'- aUCUGgGCGUG---------UCUCUaCGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 88950 0.66 0.874057
Target:  5'- cGGA-CCGCGCGGAG--GCGgaGGGCg -3'
miRNA:   3'- aUCUgGGCGUGUCUCuaCGCgaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 71328 0.66 0.874057
Target:  5'- -cGACCCGCGCGGcGGcgGUGCa---- -3'
miRNA:   3'- auCUGGGCGUGUC-UCuaCGCGaucug -5'
25519 3' -55.2 NC_005337.1 + 68541 0.66 0.866452
Target:  5'- -cGugCCGCGCuAGuGAcgGCGCcGGGCg -3'
miRNA:   3'- auCugGGCGUG-UCuCUa-CGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 76810 0.66 0.866452
Target:  5'- aGGugCgCGCGCuu-GAUGCGC-AGGCg -3'
miRNA:   3'- aUCugG-GCGUGucuCUACGCGaUCUG- -5'
25519 3' -55.2 NC_005337.1 + 59842 0.66 0.866452
Target:  5'- gAGAUCCGgcgguaGCGGucGAUGCGCcggUAGACg -3'
miRNA:   3'- aUCUGGGCg-----UGUCu-CUACGCG---AUCUG- -5'
25519 3' -55.2 NC_005337.1 + 63391 0.66 0.866452
Target:  5'- -uGGCgC-CGCAGAGc-GCGCUGGACa -3'
miRNA:   3'- auCUGgGcGUGUCUCuaCGCGAUCUG- -5'
25519 3' -55.2 NC_005337.1 + 78542 0.66 0.866452
Target:  5'- aUGGACCCGUACAcGGGcgcgccGUGCGCg---- -3'
miRNA:   3'- -AUCUGGGCGUGU-CUC------UACGCGaucug -5'
25519 3' -55.2 NC_005337.1 + 93933 0.66 0.866452
Target:  5'- -cGACUcuCGCGuCGGAGAgGCGaCUAGACc -3'
miRNA:   3'- auCUGG--GCGU-GUCUCUaCGC-GAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.