miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 67295 0.66 0.993143
Target:  5'- cCCGCGUugaggcgguuguAGCGGUccauggcgcgcucgaUCGCgcgCGcGUCCg -3'
miRNA:   3'- -GGUGCG------------UCGCCA---------------AGCGauaGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 130911 0.66 0.992744
Target:  5'- gCCGCGCacaccuccugcaAGCGG-UCGCUG----AUCCa -3'
miRNA:   3'- -GGUGCG------------UCGCCaAGCGAUagcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 86238 0.66 0.992744
Target:  5'- uCCGCGC-GUcGUUCGCcgcCGUGUUCg -3'
miRNA:   3'- -GGUGCGuCGcCAAGCGauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 35046 0.66 0.992744
Target:  5'- gCGCGUGGUGGacCGC-GUCGaaGUCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGaUAGCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 17047 0.66 0.992744
Target:  5'- uCCGCGCGGUcugcacGUUcCGCUGgaugCGcAUCCa -3'
miRNA:   3'- -GGUGCGUCGc-----CAA-GCGAUa---GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 29216 0.66 0.992744
Target:  5'- gCUGCGCAGCGccgCGCggccgggCGUcgCCu -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGaua----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 62360 0.66 0.992642
Target:  5'- uCCACGCugucgucgaaGGCGGUgcgcaggUCGCUGgugCG-GUUCa -3'
miRNA:   3'- -GGUGCG----------UCGCCA-------AGCGAUa--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 94771 0.66 0.992433
Target:  5'- cCCGCGguGgGGUUCaccagcagcagcgcGCgcgCGUcgCCg -3'
miRNA:   3'- -GGUGCguCgCCAAG--------------CGauaGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 123683 0.66 0.991665
Target:  5'- cCCcCGCGGCGGgaccggGCUcGUCGcggagAUCCg -3'
miRNA:   3'- -GGuGCGUCGCCaag---CGA-UAGCa----UAGG- -5'
25519 5' -51.3 NC_005337.1 + 68948 0.66 0.991665
Target:  5'- cCCGCGCGGCGGcacCGg---CGUGcccuUCCa -3'
miRNA:   3'- -GGUGCGUCGCCaa-GCgauaGCAU----AGG- -5'
25519 5' -51.3 NC_005337.1 + 131491 0.66 0.991665
Target:  5'- aCAUGCGGCaccGGUcCGCgcUCGUGgacagCCu -3'
miRNA:   3'- gGUGCGUCG---CCAaGCGauAGCAUa----GG- -5'
25519 5' -51.3 NC_005337.1 + 128321 0.66 0.991665
Target:  5'- gCGCGCGGCGcGagCGCgacugcUCG-GUCCa -3'
miRNA:   3'- gGUGCGUCGC-CaaGCGau----AGCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 25526 0.66 0.991665
Target:  5'- uCCAgGCAGCGGcccaCGCgccgCGagaAUCCg -3'
miRNA:   3'- -GGUgCGUCGCCaa--GCGaua-GCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 43017 0.66 0.991665
Target:  5'- cUCACGCAGCuGcaCuCUAgCGUGUCCu -3'
miRNA:   3'- -GGUGCGUCGcCaaGcGAUaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 113138 0.66 0.991551
Target:  5'- aCGCGCuGCGGUacgUGCUGUucgcggugcgcugCGUGgcggCCg -3'
miRNA:   3'- gGUGCGuCGCCAa--GCGAUA-------------GCAUa---GG- -5'
25519 5' -51.3 NC_005337.1 + 131169 0.66 0.991551
Target:  5'- gCCGCGgucGCGGUcgcggagUCGCUGgcCGUcgCCg -3'
miRNA:   3'- -GGUGCgu-CGCCA-------AGCGAUa-GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 64346 0.66 0.990464
Target:  5'- gCGcCGCGGCGGUacacaGC---CGUGUCCa -3'
miRNA:   3'- gGU-GCGUCGCCAag---CGauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 58254 0.66 0.990464
Target:  5'- -gGCGCGGCGGUcuucCGCg--UGUA-CCg -3'
miRNA:   3'- ggUGCGUCGCCAa---GCGauaGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 95307 0.66 0.990464
Target:  5'- gCGCGCGGCGcGcugUUGCgcUCGUcgUCg -3'
miRNA:   3'- gGUGCGUCGC-Ca--AGCGauAGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 71972 0.66 0.990464
Target:  5'- aUCGCGCuGCuGUUCGCcAUgGUggCCu -3'
miRNA:   3'- -GGUGCGuCGcCAAGCGaUAgCAuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.