miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 3' -48.5 NC_005337.1 + 98460 0.66 0.999398
Target:  5'- uGGcGCGGGAAGuacacguaccgcaucACGAggucCAcCUUCGACg -3'
miRNA:   3'- -CCcUGCCCUUU---------------UGCUa---GUaGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 104300 0.66 0.999344
Target:  5'- aGGACGGGAucACGcccgacGUCAUCaUCaACu -3'
miRNA:   3'- cCCUGCCCUuuUGC------UAGUAGaAGcUG- -5'
25520 3' -48.5 NC_005337.1 + 54571 0.66 0.999344
Target:  5'- cGGGcACuGGGGcaAGACGcgCAUCUaCGAg -3'
miRNA:   3'- -CCC-UG-CCCU--UUUGCuaGUAGAaGCUg -5'
25520 3' -48.5 NC_005337.1 + 22545 0.66 0.999344
Target:  5'- uGGACGGGAAGACcuUCAcCgcgGACg -3'
miRNA:   3'- cCCUGCCCUUUUGcuAGUaGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 108014 0.66 0.999255
Target:  5'- aGGGCGGGcgcgugauggcgcccAAGcagaagauguACGAcaagcacgugcUCAUCUUCGACu -3'
miRNA:   3'- cCCUGCCC---------------UUU----------UGCU-----------AGUAGAAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 46978 0.66 0.99919
Target:  5'- uGGACauGGAGACGAgcuUCAUCUUCGu- -3'
miRNA:   3'- cCCUGccCUUUUGCU---AGUAGAAGCug -5'
25520 3' -48.5 NC_005337.1 + 20791 0.66 0.99919
Target:  5'- gGGGACGGGcgugccGGAGCuggacaggaaGGUCAggaUCUUgGACu -3'
miRNA:   3'- -CCCUGCCC------UUUUG----------CUAGU---AGAAgCUG- -5'
25520 3' -48.5 NC_005337.1 + 118648 0.66 0.99919
Target:  5'- cGGGGCGGGGcgcGACGcgCA-CggaGACg -3'
miRNA:   3'- -CCCUGCCCUu--UUGCuaGUaGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 84746 0.66 0.99919
Target:  5'- cGGGAgauCGaGGAGAACGugugucccAUCGUCaUCGAg -3'
miRNA:   3'- -CCCU---GC-CCUUUUGC--------UAGUAGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 100684 0.66 0.99919
Target:  5'- cGGugcuCGGGcucGAGACGGUCuGUC-UCGGCg -3'
miRNA:   3'- cCCu---GCCC---UUUUGCUAG-UAGaAGCUG- -5'
25520 3' -48.5 NC_005337.1 + 76924 0.66 0.999155
Target:  5'- gGGGGCGGGAguuacaaAAACGcgCucUCUUuuuaacgCGGCg -3'
miRNA:   3'- -CCCUGCCCU-------UUUGCuaGu-AGAA-------GCUG- -5'
25520 3' -48.5 NC_005337.1 + 121533 0.66 0.999006
Target:  5'- cGGACGuGGAGACGGaCAUCcucCGGCa -3'
miRNA:   3'- cCCUGCcCUUUUGCUaGUAGaa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 55430 0.67 0.998529
Target:  5'- aGGACGGGAAGu---UCAUCaaaGACa -3'
miRNA:   3'- cCCUGCCCUUUugcuAGUAGaagCUG- -5'
25520 3' -48.5 NC_005337.1 + 67917 0.67 0.998529
Target:  5'- cGGACGGGAGugccGCGGUgGUCgcgcUCcACg -3'
miRNA:   3'- cCCUGCCCUUu---UGCUAgUAGa---AGcUG- -5'
25520 3' -48.5 NC_005337.1 + 13900 0.67 0.998529
Target:  5'- -uGACGGGGAccAGCG-UCAUCgUCGGg -3'
miRNA:   3'- ccCUGCCCUU--UUGCuAGUAGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 91610 0.67 0.997871
Target:  5'- cGGGCGcGGAAGcCGAUC-UCgggCGGCc -3'
miRNA:   3'- cCCUGC-CCUUUuGCUAGuAGaa-GCUG- -5'
25520 3' -48.5 NC_005337.1 + 58431 0.68 0.996434
Target:  5'- cGGAgCGGcGAGACGAUCAgCggCGACc -3'
miRNA:   3'- cCCU-GCCcUUUUGCUAGUaGaaGCUG- -5'
25520 3' -48.5 NC_005337.1 + 6491 0.68 0.995807
Target:  5'- cGGACGaGGAGGuCGAUCGgcggCUUCcGCu -3'
miRNA:   3'- cCCUGC-CCUUUuGCUAGUa---GAAGcUG- -5'
25520 3' -48.5 NC_005337.1 + 10901 0.68 0.995807
Target:  5'- gGGGACGGGGuacagGGGCGGgggCAggUCcUCGAa -3'
miRNA:   3'- -CCCUGCCCU-----UUUGCUa--GU--AGaAGCUg -5'
25520 3' -48.5 NC_005337.1 + 47789 0.68 0.995532
Target:  5'- aGGGCGGGGugcugcgcacguGCGAccccUCGcgCUUCGACg -3'
miRNA:   3'- cCCUGCCCUuu----------UGCU----AGUa-GAAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.