miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 115146 0.66 0.84276
Target:  5'- -cGCGCGugGCGGaGG-CcUGCgUCCg -3'
miRNA:   3'- caCGCGCugCGCCgCUaGcACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 113163 0.72 0.524315
Target:  5'- gGUGCGCuGCGUGGCGGcCG-GCgUCCc -3'
miRNA:   3'- -CACGCGcUGCGCCGCUaGCaCGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 111724 0.71 0.563894
Target:  5'- -cGCGCGucCGCGGUGAagGU-CUUCCc -3'
miRNA:   3'- caCGCGCu-GCGCCGCUagCAcGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 110965 0.71 0.594091
Target:  5'- cUGCGCGGcCGCGuCGAcgUCGUGCguguugacgUCCa -3'
miRNA:   3'- cACGCGCU-GCGCcGCU--AGCACGa--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 109465 0.76 0.340181
Target:  5'- cGUGUGCGuGCGCGcGUGggCGcGCUUCCg -3'
miRNA:   3'- -CACGCGC-UGCGC-CGCuaGCaCGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 108209 0.66 0.858456
Target:  5'- -cGCGCuacauUGCGGUGG-CGUGCgagCCg -3'
miRNA:   3'- caCGCGcu---GCGCCGCUaGCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 106560 0.74 0.396228
Target:  5'- -aGCGCGcUGCGGgaGAUCGUGCagCCg -3'
miRNA:   3'- caCGCGCuGCGCCg-CUAGCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 106041 0.73 0.47643
Target:  5'- -cGCGCGACGgcguuuCGGUGAUCGUGUa--- -3'
miRNA:   3'- caCGCGCUGC------GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 105790 0.71 0.573921
Target:  5'- -cGCGCGccGCGCGGcCGcAUCcGUGCU-CCa -3'
miRNA:   3'- caCGCGC--UGCGCC-GC-UAG-CACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 104304 0.72 0.50492
Target:  5'- -cGCGagGGCGCGGCGGcgcucugCGUGCgUCCc -3'
miRNA:   3'- caCGCg-CUGCGCCGCUa------GCACGaAGG- -5'
25520 5' -57.2 NC_005337.1 + 102416 0.73 0.439736
Target:  5'- -aGCGCGACGCGGUGGacauggaGUGgUUCUc -3'
miRNA:   3'- caCGCGCUGCGCCGCUag-----CACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 102018 0.7 0.634702
Target:  5'- cGUGCaGCG-CGCGGgcgUGAUCGcguacgccUGCUUCCc -3'
miRNA:   3'- -CACG-CGCuGCGCC---GCUAGC--------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 100701 0.66 0.834625
Target:  5'- -cGaCGCGACGCGGCGc-CGcGCUcUCg -3'
miRNA:   3'- caC-GCGCUGCGCCGCuaGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 100399 0.66 0.84276
Target:  5'- aGUGCGCgGGCGCGcGCuacgaGAUCGacGCgcgCCa -3'
miRNA:   3'- -CACGCG-CUGCGC-CG-----CUAGCa-CGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 100278 0.69 0.675278
Target:  5'- -cGCGCG-CGCaagaGGCGGUCcGUGCgcaccUUCCu -3'
miRNA:   3'- caCGCGCuGCG----CCGCUAG-CACG-----AAGG- -5'
25520 5' -57.2 NC_005337.1 + 99905 0.67 0.782272
Target:  5'- -gGCuCGcCGCGGCGGcgcuccUCGUGCUgcuguguuUCCa -3'
miRNA:   3'- caCGcGCuGCGCCGCU------AGCACGA--------AGG- -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 99408 0.71 0.563894
Target:  5'- cUGCGCaccgcGgGCGGCGGgugCGUGCUgagCCg -3'
miRNA:   3'- cACGCGc----UgCGCCGCUa--GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 99296 0.7 0.60422
Target:  5'- -gGCGCGGCGCGGCGuUCc-GCagcgCCg -3'
miRNA:   3'- caCGCGCUGCGCCGCuAGcaCGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 98724 0.68 0.763666
Target:  5'- -cGCGCGGCGCccUGcgCGUGCUgaCCg -3'
miRNA:   3'- caCGCGCUGCGccGCuaGCACGAa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.