Results 21 - 40 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25520 | 5' | -57.2 | NC_005337.1 | + | 110965 | 0.71 | 0.594091 |
Target: 5'- cUGCGCGGcCGCGuCGAcgUCGUGCguguugacgUCCa -3' miRNA: 3'- cACGCGCU-GCGCcGCU--AGCACGa--------AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 105790 | 0.71 | 0.573921 |
Target: 5'- -cGCGCGccGCGCGGcCGcAUCcGUGCU-CCa -3' miRNA: 3'- caCGCGC--UGCGCC-GC-UAG-CACGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 40679 | 0.72 | 0.495338 |
Target: 5'- -gGCGCGGCGaCGGCGGUaucuCUUCCu -3' miRNA: 3'- caCGCGCUGC-GCCGCUAgcacGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 109465 | 0.76 | 0.340181 |
Target: 5'- cGUGUGCGuGCGCGcGUGggCGcGCUUCCg -3' miRNA: 3'- -CACGCGC-UGCGC-CGCuaGCaCGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 93746 | 0.69 | 0.682337 |
Target: 5'- -cGCGCGcCGCGGCGGcugcaugccgcaccUCGU-CUUCg -3' miRNA: 3'- caCGCGCuGCGCCGCU--------------AGCAcGAAGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 38898 | 0.7 | 0.634702 |
Target: 5'- -cGCGCGucGCGCGGCcGUCGcUGUUgCCu -3' miRNA: 3'- caCGCGC--UGCGCCGcUAGC-ACGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 39486 | 0.71 | 0.573921 |
Target: 5'- -cGCGCGACGCGcGCGcgC-UGCUgCUg -3' miRNA: 3'- caCGCGCUGCGC-CGCuaGcACGAaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 127888 | 0.83 | 0.115919 |
Target: 5'- -cGCGCGGCGcCGGCGAgcgCGUGCgggCCg -3' miRNA: 3'- caCGCGCUGC-GCCGCUa--GCACGaa-GG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 102018 | 0.7 | 0.634702 |
Target: 5'- cGUGCaGCG-CGCGGgcgUGAUCGcguacgccUGCUUCCc -3' miRNA: 3'- -CACG-CGCuGCGCC---GCUAGC--------ACGAAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 80274 | 0.89 | 0.049198 |
Target: 5'- cGUGCGCGACGCGGUGAUCcggcucacaaacgcGUGCgggUCCa -3' miRNA: 3'- -CACGCGCUGCGCCGCUAG--------------CACGa--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 45945 | 0.71 | 0.573921 |
Target: 5'- -cGCGCG-CGcCGGCGcgCGUGgCgUCCa -3' miRNA: 3'- caCGCGCuGC-GCCGCuaGCAC-GaAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 59266 | 0.7 | 0.60422 |
Target: 5'- gGUGCGCGucaGCGGCGGccgccUCGUGUa--- -3' miRNA: 3'- -CACGCGCug-CGCCGCU-----AGCACGaagg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 33605 | 0.72 | 0.534119 |
Target: 5'- -cGCGCGGCGCGaacGCGG-CGUGgUUCa -3' miRNA: 3'- caCGCGCUGCGC---CGCUaGCACgAAGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 104304 | 0.72 | 0.50492 |
Target: 5'- -cGCGagGGCGCGGCGGcgcucugCGUGCgUCCc -3' miRNA: 3'- caCGCg-CUGCGCCGCUa------GCACGaAGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 4582 | 0.73 | 0.470827 |
Target: 5'- -cGCG-GGCGCGGCGAcugcgCGUGCUggugcaggagcguguUCCu -3' miRNA: 3'- caCGCgCUGCGCCGCUa----GCACGA---------------AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 106560 | 0.74 | 0.396228 |
Target: 5'- -aGCGCGcUGCGGgaGAUCGUGCagCCg -3' miRNA: 3'- caCGCGCuGCGCCg-CUAGCACGaaGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 36897 | 0.69 | 0.69539 |
Target: 5'- -cGCGCGGCGCGGCGug---GCcgUCa -3' miRNA: 3'- caCGCGCUGCGCCGCuagcaCGa-AGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 35117 | 0.69 | 0.685356 |
Target: 5'- -cGCGCGGCGCGGaCGcccaGUGCggCg -3' miRNA: 3'- caCGCGCUGCGCC-GCuag-CACGaaGg -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 92098 | 0.69 | 0.665165 |
Target: 5'- -cGCGCagcugGACGCGGUGuccgaGUCGgUGCUcuUCCa -3' miRNA: 3'- caCGCG-----CUGCGCCGC-----UAGC-ACGA--AGG- -5' |
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25520 | 5' | -57.2 | NC_005337.1 | + | 76552 | 0.7 | 0.644869 |
Target: 5'- uUGCGCGugGCGuuGUGGUCGUcGUgcaCCg -3' miRNA: 3'- cACGCGCugCGC--CGCUAGCA-CGaa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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