miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 55104 0.66 0.914137
Target:  5'- cGAG-AC-GGCCGa-GAUCGUGGAgGUg -3'
miRNA:   3'- -CUCaUGaCCGGCgcCUAGUACCUgCG- -5'
25521 3' -55.6 NC_005337.1 + 53908 0.66 0.914137
Target:  5'- ---cGCUGGCgGUGGAgacgC-UGGACGg -3'
miRNA:   3'- cucaUGACCGgCGCCUa---GuACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 48305 0.66 0.914137
Target:  5'- gGAGUACcuccagcggGGCaCGgGGAUgugCGUGGACuGCu -3'
miRNA:   3'- -CUCAUGa--------CCG-GCgCCUA---GUACCUG-CG- -5'
25521 3' -55.6 NC_005337.1 + 96833 0.66 0.908095
Target:  5'- cGGGUGCgcaGCCGCGG--CGUGG-CGUu -3'
miRNA:   3'- -CUCAUGac-CGGCGCCuaGUACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 92954 0.66 0.908095
Target:  5'- -cGUGCUGG-UGCG---CGUGGACGCc -3'
miRNA:   3'- cuCAUGACCgGCGCcuaGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 76523 0.66 0.907477
Target:  5'- cGGUGgUGGaaCCGCGGGUCGUcguaguugaugaaGG-CGCa -3'
miRNA:   3'- cUCAUgACC--GGCGCCUAGUA-------------CCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 60198 0.66 0.901811
Target:  5'- cGGGUGC-GGCgCGgGGGgggacggCuUGGGCGCg -3'
miRNA:   3'- -CUCAUGaCCG-GCgCCUa------GuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 115485 0.66 0.901811
Target:  5'- cGGUGCacgcacggGGCCGUGGAcgUCA-GGuGCGCc -3'
miRNA:   3'- cUCAUGa-------CCGGCGCCU--AGUaCC-UGCG- -5'
25521 3' -55.6 NC_005337.1 + 97458 0.66 0.901811
Target:  5'- ---aGgUGGuCCGCG--UCGUGGACGCc -3'
miRNA:   3'- cucaUgACC-GGCGCcuAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 95452 0.66 0.901811
Target:  5'- --cUACcGGCCGUucGGAgaacUCGUGGAuCGCg -3'
miRNA:   3'- cucAUGaCCGGCG--CCU----AGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 2192 0.66 0.901811
Target:  5'- cGGcGCaGGCgGCGGA-CGcGGGCGCg -3'
miRNA:   3'- cUCaUGaCCGgCGCCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 13232 0.66 0.901811
Target:  5'- uGGUACcGGCCcaccGCGGAccgCA-GGAUGCc -3'
miRNA:   3'- cUCAUGaCCGG----CGCCUa--GUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 129884 0.66 0.901811
Target:  5'- cGGUGgUaGCgGUGGAUC-UGGugGCa -3'
miRNA:   3'- cUCAUgAcCGgCGCCUAGuACCugCG- -5'
25521 3' -55.6 NC_005337.1 + 27445 0.66 0.895291
Target:  5'- cAGUACgUGGUgGCGGGgacgGGACGg -3'
miRNA:   3'- cUCAUG-ACCGgCGCCUaguaCCUGCg -5'
25521 3' -55.6 NC_005337.1 + 35770 0.66 0.888536
Target:  5'- -cGgcCUuGCCGCGGAacUCggGGACGUc -3'
miRNA:   3'- cuCauGAcCGGCGCCU--AGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 97614 0.66 0.88155
Target:  5'- ---cGgUGGCCGCGGccuUCGcGGACGg -3'
miRNA:   3'- cucaUgACCGGCGCCu--AGUaCCUGCg -5'
25521 3' -55.6 NC_005337.1 + 48170 0.66 0.88155
Target:  5'- cGAGUGCUGGgaCC-CGGAgugCGUcuccggGGACGUg -3'
miRNA:   3'- -CUCAUGACC--GGcGCCUa--GUA------CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 45324 0.66 0.88155
Target:  5'- gGGGUGCccaCCaagaccagGCGGAUCAUgGGGCGCg -3'
miRNA:   3'- -CUCAUGaccGG--------CGCCUAGUA-CCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 37683 0.66 0.88155
Target:  5'- aGAGUuCgagGGCgGCGGcGUCcaGGACGCc -3'
miRNA:   3'- -CUCAuGa--CCGgCGCC-UAGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65127 0.66 0.878693
Target:  5'- uGGUcgcACUGGCCGCGaaggcggccgcCGUGGACcGCg -3'
miRNA:   3'- cUCA---UGACCGGCGCcua--------GUACCUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.