miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 28959 0.66 0.730671
Target:  5'- cGUGCuGGgCA---ACUGgGGCGUGCGCa -3'
miRNA:   3'- -CGCG-CCgGUagcUGGCgUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 81375 0.66 0.730671
Target:  5'- uGCGCGGU--UCGGCUGCGacGCGaUGaGCa -3'
miRNA:   3'- -CGCGCCGguAGCUGGCGU--CGC-ACgCG- -5'
25521 5' -60.4 NC_005337.1 + 11616 0.66 0.730671
Target:  5'- gGCG-GGCCAccugcUCGACgagucgcgucuUGCGGCG-GUGCu -3'
miRNA:   3'- -CGCgCCGGU-----AGCUG-----------GCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 36500 0.66 0.730671
Target:  5'- -aGCGGUCcuucUCG--CGCAGCGcGCGCg -3'
miRNA:   3'- cgCGCCGGu---AGCugGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 96631 0.66 0.730671
Target:  5'- uCGCGGUgAagccCGACCGCGGCGccugGaugaGCa -3'
miRNA:   3'- cGCGCCGgUa---GCUGGCGUCGCa---Cg---CG- -5'
25521 5' -60.4 NC_005337.1 + 36673 0.66 0.730671
Target:  5'- gGCGaUGGCCAgCGACUuCAGCacgGCGUc -3'
miRNA:   3'- -CGC-GCCGGUaGCUGGcGUCGca-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 96830 0.66 0.730671
Target:  5'- cUGCGGgUG-CGcaGCCGCGGCGUGgCGUu -3'
miRNA:   3'- cGCGCCgGUaGC--UGGCGUCGCAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 25402 0.66 0.730671
Target:  5'- -gGCGGCCucggaguUCGGguuCCGCucgcacgacGGCGUGuCGCc -3'
miRNA:   3'- cgCGCCGGu------AGCU---GGCG---------UCGCAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 89796 0.66 0.730671
Target:  5'- aCGCGGCCGcgccUCGaACUGgccucagcuCGGCGagGCGCu -3'
miRNA:   3'- cGCGCCGGU----AGC-UGGC---------GUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 111265 0.66 0.730671
Target:  5'- aCGCGGCgCAaguGCCGCAGCaUGCucGCa -3'
miRNA:   3'- cGCGCCG-GUagcUGGCGUCGcACG--CG- -5'
25521 5' -60.4 NC_005337.1 + 91879 0.66 0.730671
Target:  5'- aGCGaGGCCG-CGcGCCGCGGCGccuccggGuCGCc -3'
miRNA:   3'- -CGCgCCGGUaGC-UGGCGUCGCa------C-GCG- -5'
25521 5' -60.4 NC_005337.1 + 111149 0.66 0.730671
Target:  5'- gGCGCauGGCCG-CGACCaCGGCG-GgGUu -3'
miRNA:   3'- -CGCG--CCGGUaGCUGGcGUCGCaCgCG- -5'
25521 5' -60.4 NC_005337.1 + 108573 0.66 0.730671
Target:  5'- gGCGCGGCCGgacaacCCGCucc-UGCGCg -3'
miRNA:   3'- -CGCGCCGGUagcu--GGCGucgcACGCG- -5'
25521 5' -60.4 NC_005337.1 + 124960 0.66 0.730671
Target:  5'- aGCuCGGCUGUCGuCCGU-GCGUuCGCc -3'
miRNA:   3'- -CGcGCCGGUAGCuGGCGuCGCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 46253 0.66 0.730671
Target:  5'- uGCGcCGGCaCAUCcugcuGACCauGC-GCGUGCaGCa -3'
miRNA:   3'- -CGC-GCCG-GUAG-----CUGG--CGuCGCACG-CG- -5'
25521 5' -60.4 NC_005337.1 + 76221 0.66 0.730671
Target:  5'- gGUGCGGUUGUgcAgCGCGGCGUugaggaGCGCa -3'
miRNA:   3'- -CGCGCCGGUAgcUgGCGUCGCA------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 33413 0.66 0.730671
Target:  5'- -gGCGGCC----GCCGUGGaugGUGCGCu -3'
miRNA:   3'- cgCGCCGGuagcUGGCGUCg--CACGCG- -5'
25521 5' -60.4 NC_005337.1 + 12679 0.66 0.729715
Target:  5'- aGCGCGuCCGUCaucauACCGUucccgguGGCGUccGCGCg -3'
miRNA:   3'- -CGCGCcGGUAGc----UGGCG-------UCGCA--CGCG- -5'
25521 5' -60.4 NC_005337.1 + 69857 0.66 0.729715
Target:  5'- cGCuGUGGCCGccaagCGGCCGCuGCuggaccuGUGcCGCc -3'
miRNA:   3'- -CG-CGCCGGUa----GCUGGCGuCG-------CAC-GCG- -5'
25521 5' -60.4 NC_005337.1 + 68888 0.66 0.728758
Target:  5'- cGCGCagcuGGCCAa--GCCGCucagcgacaagcGCGUGUGCg -3'
miRNA:   3'- -CGCG----CCGGUagcUGGCGu-----------CGCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.