miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 5' -60.4 NC_005337.1 + 127636 0.75 0.238985
Target:  5'- cGCGCGGCgGUCuucaaccCUGCGGCGUGCcgGCg -3'
miRNA:   3'- -CGCGCCGgUAGcu-----GGCGUCGCACG--CG- -5'
25521 5' -60.4 NC_005337.1 + 58154 0.76 0.222608
Target:  5'- -gGCGGCCuUCG-CgCGCAagcGCGUGCGCa -3'
miRNA:   3'- cgCGCCGGuAGCuG-GCGU---CGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 131011 0.78 0.158365
Target:  5'- aCGUGGCCGccgCGcACCGCaacgacaaGGCGUGCGCg -3'
miRNA:   3'- cGCGCCGGUa--GC-UGGCG--------UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 6112 0.82 0.081779
Target:  5'- uCGCGGCCA-CGugCaGCGGCGUGCGUc -3'
miRNA:   3'- cGCGCCGGUaGCugG-CGUCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 118236 0.74 0.274751
Target:  5'- cGCGCGGCgGcaggCG-CCGCAGCGcGUGUa -3'
miRNA:   3'- -CGCGCCGgUa---GCuGGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 44632 0.75 0.256358
Target:  5'- gGCGCuGCUccugAUCGugcGCCGCAGCGgGCGCu -3'
miRNA:   3'- -CGCGcCGG----UAGC---UGGCGUCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 132621 0.76 0.207195
Target:  5'- gGCgGCGGCCAagcUCGucGCCGCgGGCGcGCGCa -3'
miRNA:   3'- -CG-CGCCGGU---AGC--UGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 33577 0.83 0.077643
Target:  5'- aGCGCGGCgccgcgucgCGUCGGCCGCGcGCGcgGCGCg -3'
miRNA:   3'- -CGCGCCG---------GUAGCUGGCGU-CGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 58024 0.75 0.250455
Target:  5'- uGCuCGGCCAggccgcgcucuUCGACgGCGGCGUGCu- -3'
miRNA:   3'- -CGcGCCGGU-----------AGCUGgCGUCGCACGcg -5'
25521 5' -60.4 NC_005337.1 + 108880 0.84 0.06469
Target:  5'- aCGCGGUCGUCGACgGCGGCGgcagcgaGCGCg -3'
miRNA:   3'- cGCGCCGGUAGCUGgCGUCGCa------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 12035 0.76 0.217364
Target:  5'- uGC-CGGUCAUCGGCgUGCggucguccGGCGUGCGCg -3'
miRNA:   3'- -CGcGCCGGUAGCUG-GCG--------UCGCACGCG- -5'
25521 5' -60.4 NC_005337.1 + 8279 0.75 0.249288
Target:  5'- aCGCGGCCG-CGACgUGCAGCGgggucugcagccGCGCg -3'
miRNA:   3'- cGCGCCGGUaGCUG-GCGUCGCa-----------CGCG- -5'
25521 5' -60.4 NC_005337.1 + 711 0.77 0.192713
Target:  5'- cGCGCGcacGCCcgCGGCCGCGGgGUaCGCg -3'
miRNA:   3'- -CGCGC---CGGuaGCUGGCGUCgCAcGCG- -5'
25521 5' -60.4 NC_005337.1 + 59719 0.78 0.162336
Target:  5'- cGCGCGGCCAgcaucacgCGcCgCGCGGCGgaGCGCg -3'
miRNA:   3'- -CGCGCCGGUa-------GCuG-GCGUCGCa-CGCG- -5'
25521 5' -60.4 NC_005337.1 + 90371 0.8 0.114217
Target:  5'- cGCGCGGCCucuuccCGGCCGC-GCGUGCa- -3'
miRNA:   3'- -CGCGCCGGua----GCUGGCGuCGCACGcg -5'
25521 5' -60.4 NC_005337.1 + 2212 0.81 0.097971
Target:  5'- gGCGCGGCCcg-GGCCGCgAGCGcGCGCa -3'
miRNA:   3'- -CGCGCCGGuagCUGGCG-UCGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 30745 0.74 0.294186
Target:  5'- aGCGCGcGCUccUCgGGCgGCAGCGUGCGg -3'
miRNA:   3'- -CGCGC-CGGu-AG-CUGgCGUCGCACGCg -5'
25521 5' -60.4 NC_005337.1 + 24063 0.74 0.281113
Target:  5'- aCGCGGCCG-CGGCCGCGGC---CGCc -3'
miRNA:   3'- cGCGCCGGUaGCUGGCGUCGcacGCG- -5'
25521 5' -60.4 NC_005337.1 + 130962 0.75 0.262374
Target:  5'- gGCGUGGCCGUggaCGugCGCAaCGcGCGCu -3'
miRNA:   3'- -CGCGCCGGUA---GCugGCGUcGCaCGCG- -5'
25521 5' -60.4 NC_005337.1 + 118918 0.75 0.258751
Target:  5'- aGUGCGcGCCuggaagcgucgcgCGGgCGCAGCGUGCGUc -3'
miRNA:   3'- -CGCGC-CGGua-----------GCUgGCGUCGCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.