miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25522 5' -49.3 NC_005337.1 + 51698 0.66 0.998597
Target:  5'- gCCAGucUGGccUGcGACGGc-GACGCGCu -3'
miRNA:   3'- gGGUUu-ACU--ACuCUGCCaaCUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 123843 0.66 0.998597
Target:  5'- uCCCGGcguucgcggcGUGcAUG-GACGGcgGGCGCGg -3'
miRNA:   3'- -GGGUU----------UAC-UACuCUGCCaaCUGCGCg -5'
25522 5' -49.3 NC_005337.1 + 53416 0.66 0.998597
Target:  5'- aCCuGGUGAgcgugGuGACGG-UGACGCa- -3'
miRNA:   3'- gGGuUUACUa----CuCUGCCaACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 28030 0.66 0.998597
Target:  5'- uCCCAuguuuUGGUGGuACGGUguUGAUGCa- -3'
miRNA:   3'- -GGGUuu---ACUACUcUGCCA--ACUGCGcg -5'
25522 5' -49.3 NC_005337.1 + 65697 0.66 0.998597
Target:  5'- uCCCuguUGGUGcacAGccgcacGCGGUggGGCGCGCc -3'
miRNA:   3'- -GGGuuuACUAC---UC------UGCCAa-CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 66929 0.66 0.998307
Target:  5'- gUCCA--UGGUGGccACGGacccgGACGCGCg -3'
miRNA:   3'- -GGGUuuACUACUc-UGCCaa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 50356 0.66 0.998307
Target:  5'- cCCCAcgccgGcgGAGACGGgcccgGGCacggGCGCc -3'
miRNA:   3'- -GGGUuua--CuaCUCUGCCaa---CUG----CGCG- -5'
25522 5' -49.3 NC_005337.1 + 17541 0.66 0.997969
Target:  5'- aCCAuuaguggcAGUGGuUGAGACGGUgguaGugGUGg -3'
miRNA:   3'- gGGU--------UUACU-ACUCUGCCAa---CugCGCg -5'
25522 5' -49.3 NC_005337.1 + 17638 0.66 0.997969
Target:  5'- gCCCGucUGGUGAGGucuUUGGCGgGCg -3'
miRNA:   3'- -GGGUuuACUACUCUgccAACUGCgCG- -5'
25522 5' -49.3 NC_005337.1 + 77488 0.66 0.997969
Target:  5'- uCCCGGGgcGGUGcauGGCGGcgaccgGACGCGUu -3'
miRNA:   3'- -GGGUUUa-CUACu--CUGCCaa----CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 132757 0.66 0.997575
Target:  5'- aCgAAGUGgcG-GACGcGcUGGCGCGCg -3'
miRNA:   3'- gGgUUUACuaCuCUGC-CaACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 109771 0.66 0.99712
Target:  5'- gUCCGc--GGUGGGACGaccucgcgugcGUacaUGACGCGCa -3'
miRNA:   3'- -GGGUuuaCUACUCUGC-----------CA---ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 108531 0.66 0.99712
Target:  5'- gCUGGAcGgcGcGACGGUgcggGGCGCGCg -3'
miRNA:   3'- gGGUUUaCuaCuCUGCCAa---CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 122779 0.66 0.99712
Target:  5'- gCCgCGGAUcAUG-GACGcGUUGcuGCGCGCg -3'
miRNA:   3'- -GG-GUUUAcUACuCUGC-CAAC--UGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 81025 0.67 0.996597
Target:  5'- gUCCGGGcgugGAGAUGGcgggGAUGCGCa -3'
miRNA:   3'- -GGGUUUacuaCUCUGCCaa--CUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 74997 0.67 0.996597
Target:  5'- aCCAcGUacacGAGGCGGccgccgcUGACGCGCa -3'
miRNA:   3'- gGGUuUAcua-CUCUGCCa------ACUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 122835 0.67 0.995997
Target:  5'- uUCCAGAUGGaGAGGuuUGGUgcugGAgagccCGCGCg -3'
miRNA:   3'- -GGGUUUACUaCUCU--GCCAa---CU-----GCGCG- -5'
25522 5' -49.3 NC_005337.1 + 88953 0.67 0.995997
Target:  5'- aCCGc--GcgGAGGCGGagGGCGCGg -3'
miRNA:   3'- gGGUuuaCuaCUCUGCCaaCUGCGCg -5'
25522 5' -49.3 NC_005337.1 + 59002 0.67 0.995313
Target:  5'- gCUCAAGcgGAgcucgcugGAGugGGU--GCGCGCg -3'
miRNA:   3'- -GGGUUUa-CUa-------CUCugCCAacUGCGCG- -5'
25522 5' -49.3 NC_005337.1 + 79110 0.67 0.995313
Target:  5'- gCCGgaGAUGAUguacGAGA-GGUUGAUGCuGCu -3'
miRNA:   3'- gGGU--UUACUA----CUCUgCCAACUGCG-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.