miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25524 3' -55.4 NC_005337.1 + 79317 0.66 0.932961
Target:  5'- cGGCGGGAuCGGGauguacUCGCGGUagaaGAGGu -3'
miRNA:   3'- -CCGUUCU-GCCCgc----AGUGCUAg---CUCCu -5'
25524 3' -55.4 NC_005337.1 + 66092 0.66 0.932961
Target:  5'- cGGCgGAGGCGcugugcGGCGUCugcGCGcgCGuGGAg -3'
miRNA:   3'- -CCG-UUCUGC------CCGCAG---UGCuaGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 47824 0.66 0.932456
Target:  5'- uGCAcGACGuGGUGUgcauccgcaaggaCGCGAcCGAGGAc -3'
miRNA:   3'- cCGUuCUGC-CCGCA-------------GUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 41142 0.66 0.932456
Target:  5'- cGGCGAGACGcGCGUC-CGGgaccgucUCcAGGGg -3'
miRNA:   3'- -CCGUUCUGCcCGCAGuGCU-------AGcUCCU- -5'
25524 3' -55.4 NC_005337.1 + 83980 0.66 0.927806
Target:  5'- cGGCGcGGGCGGGCacGUCugGGccugcaCGGGGc -3'
miRNA:   3'- -CCGU-UCUGCCCG--CAGugCUa-----GCUCCu -5'
25524 3' -55.4 NC_005337.1 + 25295 0.66 0.927806
Target:  5'- cGCAcGGCGGGCGggcCGCGcGUCGAccGGc -3'
miRNA:   3'- cCGUuCUGCCCGCa--GUGC-UAGCU--CCu -5'
25524 3' -55.4 NC_005337.1 + 72979 0.66 0.922411
Target:  5'- aGCAAGAUGaaGGCcUCGC--UCGAGGAg -3'
miRNA:   3'- cCGUUCUGC--CCGcAGUGcuAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 95570 0.66 0.922411
Target:  5'- uGGCGagcacGGACGGGCaGUCcGgGGUCGGccGGGu -3'
miRNA:   3'- -CCGU-----UCUGCCCG-CAG-UgCUAGCU--CCU- -5'
25524 3' -55.4 NC_005337.1 + 58913 0.66 0.922411
Target:  5'- cGGCAGGACuccGGCGcgGCGAccguggaCGAGGAc -3'
miRNA:   3'- -CCGUUCUGc--CCGCagUGCUa------GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 84001 0.66 0.921859
Target:  5'- uGGCGgacgaggAGGCGGG-GUgCugGAUCGAGc- -3'
miRNA:   3'- -CCGU-------UCUGCCCgCA-GugCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 118645 0.66 0.916779
Target:  5'- aGGCGGGGCGGG-G-CGCGAcgCGcacGGAg -3'
miRNA:   3'- -CCGUUCUGCCCgCaGUGCUa-GCu--CCU- -5'
25524 3' -55.4 NC_005337.1 + 75417 0.66 0.916779
Target:  5'- cGCucGGCGGGCGUCAUc-UCGuGGc -3'
miRNA:   3'- cCGuuCUGCCCGCAGUGcuAGCuCCu -5'
25524 3' -55.4 NC_005337.1 + 90536 0.66 0.910908
Target:  5'- gGGCGAGAC-GGUGaUCACGGUCu-GGc -3'
miRNA:   3'- -CCGUUCUGcCCGC-AGUGCUAGcuCCu -5'
25524 3' -55.4 NC_005337.1 + 110039 0.66 0.910908
Target:  5'- uGGCGGGAacaGGGUccgcGUaGCGGUaCGGGGAu -3'
miRNA:   3'- -CCGUUCUg--CCCG----CAgUGCUA-GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 97934 0.66 0.910908
Target:  5'- gGGCGugauGGCGGuGUGUCccuuCGAUC-AGGAg -3'
miRNA:   3'- -CCGUu---CUGCC-CGCAGu---GCUAGcUCCU- -5'
25524 3' -55.4 NC_005337.1 + 30645 0.66 0.910908
Target:  5'- uGGCGAGGgaGGcugccGCGUCGCGGgccuucCGGGGGu -3'
miRNA:   3'- -CCGUUCUg-CC-----CGCAGUGCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 9707 0.66 0.910908
Target:  5'- aGCGcuuGGACGcGGCcUCGCGcagCGGGGAg -3'
miRNA:   3'- cCGU---UCUGC-CCGcAGUGCua-GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 35703 0.66 0.904802
Target:  5'- uGGCGAGcGCGGGCuccGUCuacCGGUgCGuGGAc -3'
miRNA:   3'- -CCGUUC-UGCCCG---CAGu--GCUA-GCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 122307 0.67 0.898461
Target:  5'- cGCGAGGCGGGCGUgAacuacuacaaGGUCaAGGu -3'
miRNA:   3'- cCGUUCUGCCCGCAgUg---------CUAGcUCCu -5'
25524 3' -55.4 NC_005337.1 + 58213 0.67 0.89189
Target:  5'- cGG-AAGAUGGGCGagCugGAggaggccgcCGAGGAg -3'
miRNA:   3'- -CCgUUCUGCCCGCa-GugCUa--------GCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.