miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 74916 0.66 0.683627
Target:  5'- gGCGCGGcuggcGGCC-UUCgcGCGCGcGGCCg -3'
miRNA:   3'- -CGCGCU-----CCGGuAGGa-CGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 132957 0.66 0.683627
Target:  5'- aGCGCGcuGGaCC-UCCUGCGCc--GCCg -3'
miRNA:   3'- -CGCGCu-CC-GGuAGGACGCGuucCGGa -5'
25526 5' -60.5 NC_005337.1 + 15730 0.66 0.683627
Target:  5'- cGCGCGAGGUCccacguGUCCUG-GCcgauGGCa- -3'
miRNA:   3'- -CGCGCUCCGG------UAGGACgCGuu--CCGga -5'
25526 5' -60.5 NC_005337.1 + 103734 0.66 0.683627
Target:  5'- aCGCGGagcGGcCCAUCgUGCucaGCAAGGCgCUg -3'
miRNA:   3'- cGCGCU---CC-GGUAGgACG---CGUUCCG-GA- -5'
25526 5' -60.5 NC_005337.1 + 38356 0.66 0.683627
Target:  5'- aGCGCGAGGC------GCGCGcGGCCg -3'
miRNA:   3'- -CGCGCUCCGguaggaCGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 52363 0.66 0.683627
Target:  5'- gGgGaCGGGGCCG-CUgacgGCuGCGGGGCCg -3'
miRNA:   3'- -CgC-GCUCCGGUaGGa---CG-CGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 38137 0.66 0.682627
Target:  5'- aCGCGuuccGGCucaccggccgcggCAUCCUGCGC--GGCCg -3'
miRNA:   3'- cGCGCu---CCG-------------GUAGGACGCGuuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 28501 0.66 0.673612
Target:  5'- gGCGCGcGGUCGcgcggCaCUGCGUggGGCa- -3'
miRNA:   3'- -CGCGCuCCGGUa----G-GACGCGuuCCGga -5'
25526 5' -60.5 NC_005337.1 + 19584 0.66 0.673612
Target:  5'- cGCGCGAGGaucuccacugCGUCCaGCGgagaggcggccuCGAGGCCc -3'
miRNA:   3'- -CGCGCUCCg---------GUAGGaCGC------------GUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 94272 0.66 0.673612
Target:  5'- cGCGCGGauggccuccguGGCC-UCCUGCGuCAucacGCCg -3'
miRNA:   3'- -CGCGCU-----------CCGGuAGGACGC-GUuc--CGGa -5'
25526 5' -60.5 NC_005337.1 + 10440 0.66 0.673612
Target:  5'- uGCGCGGcGGUgcgcgCGUCgUGCGCcAGGaCCUc -3'
miRNA:   3'- -CGCGCU-CCG-----GUAGgACGCGuUCC-GGA- -5'
25526 5' -60.5 NC_005337.1 + 110081 0.66 0.663565
Target:  5'- cGCGCGccucGCCGguaaCgGCGCGAGGCUg -3'
miRNA:   3'- -CGCGCuc--CGGUag--GaCGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 71741 0.66 0.663565
Target:  5'- aCGCGAcGGUCAgCCUGuCGguGGGCg- -3'
miRNA:   3'- cGCGCU-CCGGUaGGAC-GCguUCCGga -5'
25526 5' -60.5 NC_005337.1 + 103357 0.66 0.663565
Target:  5'- uCGaCGAGuCCAUCg-GCGCAGGGCUc -3'
miRNA:   3'- cGC-GCUCcGGUAGgaCGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 108846 0.66 0.660546
Target:  5'- cGCGCGGGcgacacGCCGUCgUGCgaGCGgaacccgaacuccgAGGCCg -3'
miRNA:   3'- -CGCGCUC------CGGUAGgACG--CGU--------------UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 86119 0.66 0.657525
Target:  5'- cGCGCGAGGaguccggcuccgugcCCAUCUUcagcGCGCAguugauggaccAGGUCUu -3'
miRNA:   3'- -CGCGCUCC---------------GGUAGGA----CGCGU-----------UCCGGA- -5'
25526 5' -60.5 NC_005337.1 + 90691 0.66 0.653493
Target:  5'- cCGCGuAGGCCAucagcaccUCCUucaGCGCGcGGUCg -3'
miRNA:   3'- cGCGC-UCCGGU--------AGGA---CGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 53696 0.66 0.650468
Target:  5'- aGCGCcGGGCgCGUCCUaaauagcccaugaaGCGCAucGCCc -3'
miRNA:   3'- -CGCGcUCCG-GUAGGA--------------CGCGUucCGGa -5'
25526 5' -60.5 NC_005337.1 + 11375 0.66 0.643405
Target:  5'- aGCGCGcucGCCAUCggcgggcugaUGCGCcAGGGCCc -3'
miRNA:   3'- -CGCGCuc-CGGUAGg---------ACGCG-UUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 82359 0.66 0.643405
Target:  5'- -aGCGuGGCCG-CCgacugcacgGCGCcgAGGGCCUc -3'
miRNA:   3'- cgCGCuCCGGUaGGa--------CGCG--UUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.